Zeb2os Gene Detail

Summary

• Symbol
  Zeb2os
• Name
  zinc finger E-box binding homeobox 2, opposite strand
• Synonyms
  Gm13476

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3652108
  NCBI Gene: 433424
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:45001150-45004099 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 27.31 cM

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652108	antisense lncRNA gene	Chr2:45000501-45004099 (+)
129S1/SvImJ	ENSMUSG00200011337	lncRNA gene	Chr2:42016590-42019978 (+)
A/J	ENSMUSG00195010222	lncRNA gene	Chr2:42109261-42112648 (+)
AKR/J	ENSMUSG00220020800	lncRNA gene	Chr2:42256856-42260238 (+)
BALB/cJ	ENSMUSG00180021897	lncRNA gene	Chr2:42115213-42118600 (+)
C3H/HeJ	ENSMUSG00175014335	lncRNA gene	Chr2:42103475-42106863 (+)
C57BL/6NJ	ENSMUSG00215015011	lncRNA gene	Chr2:42155086-42158471 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003178	antisense lncRNA gene	Chr2:40699185-40702139 (+)
CAST/EiJ	ENSTCUG00005001667	lncRNA gene	Chr2:41760714-41764070 (+)
CBA/J	ENSMUSG00210001121	lncRNA gene	Chr2:42157429-42160812 (+)
DBA/2J	ENSMUSG00185002646	lncRNA gene	Chr2:42017500-42020882 (+)
FVB/NJ	ENSMUSG00205001901	lncRNA gene	Chr2:41793905-41797296 (+)
JF1/MsJ	ENSUMUG00000000586	lncRNA gene	Chr2:41838861-41842278 (+)
LP/J	ENSMUSG00230000738	lncRNA gene	Chr2:43937814-43941195 (+)
NOD/ShiLtJ	ENSMUSG00190002297	lncRNA gene	Chr2:41996099-41999492 (+)
NZO/HlLtJ	ENSMUSG00225000579	lncRNA gene	Chr2:51648758-51652137 (+)
PWK/PhJ	ENSLUMG00010004686	lncRNA gene	Chr2:42019853-42023257 (+)
SPRET/EiJ	ENSMSPG00010011121	lncRNA gene	Chr2:42885932-42889310 (+)
WSB/EiJ	ENSIUOG00005001257	lncRNA gene	Chr2:42014215-42017648 (+)

Homology

• Human Ortholog
  ZEB2-AS1, ZEB2 antisense RNA 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  ZEB2-AS1, ZEB2 antisense RNA 1
  
• Synonyms
  ZEB2-AS, ZEB2AS, ZEB2NAT
• Links
  HGNC:37149

  NCBI Gene ID: 100303491

  
  
• Chr Location
  2q22.3; chr2:144517978-144521477 (+)  GRCh38

---

• MGI Vertebrate Homology
  Zeb2os stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: ZEB2-AS1
• Gene Tree
  Zeb2os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2

• Ensembl
  ENSMUSG00000052248 (Evidence)
• NCBI Gene
  433424

Representative Sequences			Length	Strain/Species
genomic	433424	NCBI Gene Model | MGI Sequence Detail	2950	C57BL/6J
transcript	NR_110572	RefSeq | MGI Sequence Detail	1305	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 1
• Earliest
  J:85842 Nelles L, et al., Organization of the mouse Zfhx1b gene encoding the two-handed zinc finger repressor Smad-interacting protein-1. Genomics. 2003 Oct;82(4):460-9

TSS for Zeb2os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17627	Chr2:45000457-45000469 (+)	-687 bp
Tssr17628	Chr2:45000484-45000507 (+)	-654 bp
Tssr17629	Chr2:45000984-45001020 (+)	-148 bp