Gm11339 Gene Detail

Summary

• Symbol
  Gm11339
• Name
  predicted gene 11339

• Feature Type
  lncRNA gene
• IDs
  MGI:3652101
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:24140792-24150158 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 10.02 cM

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652101	lncRNA gene	Chr13:24140792-24150158 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003176	antisense lncRNA gene	Chr13:21407481-21416847 (+)
A/J	MGP_AJ_G0003150	antisense lncRNA gene	Chr13:21013244-21022705 (+)
AKR/J	MGP_AKRJ_G0003132	antisense lncRNA gene	Chr13:21272084-21281458 (+)
BALB/cJ	MGP_BALBcJ_G0003138	antisense lncRNA gene	Chr13:21008134-21017500 (+)
C3H/HeJ	MGP_C3HHeJ_G0003094	antisense lncRNA gene	Chr13:21344417-21353791 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003282	antisense lncRNA gene	Chr13:22190097-22199463 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002810	antisense lncRNA gene	Chr13:19788694-19799082 (+)
CAST/EiJ	MGP_CASTEiJ_G0003062	antisense lncRNA gene	Chr13:21027472-21038611 (+)
CBA/J	MGP_CBAJ_G0003090	antisense lncRNA gene	Chr13:23046034-23055408 (+)
DBA/2J	MGP_DBA2J_G0003096	antisense lncRNA gene	Chr13:20542944-20552310 (+)
FVB/NJ	MGP_FVBNJ_G0003115	antisense lncRNA gene	Chr13:20189701-20199067 (+)
LP/J	MGP_LPJ_G0003171	antisense lncRNA gene	Chr13:21715443-21724944 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003104	antisense lncRNA gene	Chr13:23347128-23356613 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003282	antisense lncRNA gene	Chr13:21117591-21126957 (+)
PWK/PhJ	MGP_PWKPhJ_G0003020	antisense lncRNA gene	Chr13:20578346-20587888 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002965	antisense lncRNA gene	Chr13:19933112-19942535 (+)
WSB/EiJ	MGP_WSBEiJ_G0003094	antisense lncRNA gene	Chr13:21263073-21272471 (+)

Homology

• Gene Tree
  Gm11339
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm11339
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087603 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087603	Ensembl Gene Model | MGI Sequence Detail	9367	C57BL/6J
transcript	ENSMUST00000154766	Ensembl | MGI Sequence Detail	490	Not Applicable

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44