Gm13563 Gene Detail

Summary

• Symbol
  Gm13563
• Name
  predicted gene 13563

• Feature Type
  lncRNA gene
• IDs
  MGI:3652052
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:26271538-26279030 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 18.88 cM

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652052	lncRNA gene	Chr2:26271538-26279030 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003526	antisense lncRNA gene	Chr2:24330863-24338355 (+)
A/J	MGP_AJ_G0003506	antisense lncRNA gene	Chr2:23398839-23406331 (+)
AKR/J	MGP_AKRJ_G0003485	antisense lncRNA gene	Chr2:24160654-24168146 (+)
BALB/cJ	MGP_BALBcJ_G0003495	antisense lncRNA gene	Chr2:23507513-23515005 (+)
C3H/HeJ	MGP_C3HHeJ_G0003443	antisense lncRNA gene	Chr2:24120275-24127767 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003633	antisense lncRNA gene	Chr2:25114571-25122063 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003143	antisense lncRNA gene	Chr2:22277324-22285204 (+)
CAST/EiJ	MGP_CASTEiJ_G0003406	antisense lncRNA gene	Chr2:23992040-23999528 (+)
CBA/J	MGP_CBAJ_G0003440	antisense lncRNA gene	Chr2:25965751-25973243 (+)
DBA/2J	MGP_DBA2J_G0003448	antisense lncRNA gene	Chr2:23220372-23227864 (+)
FVB/NJ	MGP_FVBNJ_G0003467	antisense lncRNA gene	Chr2:22972027-22979519 (+)
LP/J	MGP_LPJ_G0003521	antisense lncRNA gene	Chr2:24275824-24283316 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003455	antisense lncRNA gene	Chr2:26115094-26125398 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003636	antisense lncRNA gene	Chr2:24118869-24126361 (+)
PWK/PhJ	MGP_PWKPhJ_G0003362	antisense lncRNA gene	Chr2:23023365-23031021 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003307	antisense lncRNA gene	Chr2:24252472-24259916 (+)
WSB/EiJ	MGP_WSBEiJ_G0003441	antisense lncRNA gene	Chr2:24225527-24233019 (+)

Homology

• Gene Tree
  Gm13563
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000085767 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085767	Ensembl Gene Model | MGI Sequence Detail	7493	C57BL/6J
transcript	ENSMUST00000150375	Ensembl | MGI Sequence Detail	851	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm13563:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16791	Chr2:26270708-26270747 (+)	-810 bp