Pex13-ps Pseudogene Detail

Summary

• Symbol
  Pex13-ps
• Name
  peroxisomal biogenesis factor 13, pseudogene
• Synonyms
  Gm13638

• Feature Type
  pseudogene
• IDs
  MGI:3652047
  NCBI Gene: 100417399
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:72462614-72463770 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.35 cM

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652047	pseudogene	Chr2:72462612-72463970 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011695	pseudogene	Chr2:72836135-72837291 (+)
A/J	MGP_AJ_G0011691	pseudogene	Chr2:69971387-69972543 (+)
AKR/J	MGP_AKRJ_G0011657	pseudogene	Chr2:71912463-71913724 (+)
BALB/cJ	MGP_BALBcJ_G0011672	pseudogene	Chr2:70187381-70188537 (+)
C3H/HeJ	MGP_C3HHeJ_G0011558	pseudogene	Chr2:72103423-72104579 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011966	pseudogene	Chr2:75019230-75021881 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010478	pseudogene	Chr2:67209390-67210571 (+)
CAST/EiJ	MGP_CASTEiJ_G0011346	pseudogene	Chr2:72320105-72321265 (+)
CBA/J	MGP_CBAJ_G0011531	pseudogene	Chr2:77761861-77763017 (+)
DBA/2J	MGP_DBA2J_G0011583	pseudogene	Chr2:69600020-69601176 (+)
FVB/NJ	MGP_FVBNJ_G0011588	pseudogene	Chr2:69007921-69009077 (+)
LP/J	MGP_LPJ_G0011651	pseudogene	Chr2:72722329-72723485 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011588	pseudogene	Chr2:79709934-79711090 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011959	pseudogene	Chr2:71986050-71987206 (+)
PWK/PhJ	MGP_PWKPhJ_G0011203	pseudogene	Chr2:69488389-69489693 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011026	pseudogene	Chr2:72216469-72217602 (+)
WSB/EiJ	MGP_WSBEiJ_G0011374	pseudogene	Chr2:72444255-72445420 (+)

Homology

• Gene Tree
  Pex13-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Targeted
  5
• Genomic Mutations
  6 involving Pex13-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083279 (Evidence)
• NCBI Gene
  100417399

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083279	Ensembl Gene Model | MGI Sequence Detail	1157	C57BL/6J
transcript	ENSMUST00000118184	Ensembl | MGI Sequence Detail	1157	Not Applicable

References

• Summaries
  All 18

  Phenotypes 13
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729