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Gm13647 Gene Detail
Summary
  • Symbol
    Gm13647
  • Name
    predicted gene 13647
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3652030
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:71568159-71575741 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 42.79 cM
Strain
Comparison
more
  • SNPs within 2kb
    86 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3652030
 lncRNA gene Chr2:71568159-71575741 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005930
 lincRNA gene Chr2:71895727-71903315 (+)
A/J MGP_AJ_G0005923
 lincRNA gene Chr2:69070003-69077982 (+)
AKR/J MGP_AKRJ_G0005898
 lincRNA gene Chr2:70976829-70984429 (+)
BALB/cJ MGP_BALBcJ_G0005901
 lincRNA gene Chr2:69269236-69276833 (+)
C3H/HeJ MGP_C3HHeJ_G0005849
 lincRNA gene Chr2:71185908-71193490 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006062
 lincRNA gene Chr2:74062655-74070235 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005395
 lincRNA gene Chr2:66290691-66299262 (+)
CAST/EiJ MGP_CASTEiJ_G0005785
 lincRNA gene Chr2:71384240-71391836 (+)
CBA/J MGP_CBAJ_G0005834
 lincRNA gene Chr2:76769576-76777158 (+)
DBA/2J MGP_DBA2J_G0005855
 lincRNA gene Chr2:68705834-68713416 (+)
FVB/NJ MGP_FVBNJ_G0005880
 lincRNA gene Chr2:68100120-68107719 (+)
LP/J MGP_LPJ_G0005934
 lincRNA gene Chr2:71782036-71789611 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005868
 lincRNA gene Chr2:78760476-78769545 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006059
 lincRNA gene Chr2:71075888-71083468 (+)
PWK/PhJ MGP_PWKPhJ_G0005734
 lincRNA gene Chr2:68585288-68592880 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005646
 lincRNA gene Chr2:71263166-71273092 (+)
WSB/EiJ MGP_WSBEiJ_G0005838
 lincRNA gene Chr2:71512526-71520127 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087570 Ensembl Gene Model | MGI Sequence Detail 7583 C57BL/6J ±  kb
transcript ENSMUST00000154654 Ensembl | MGI Sequence Detail 622 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 10
    Phenotypes 6
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
  • Latest
    J:198797 Lonfat N, et al., Transgene- and locus-dependent imprinting reveals allele-specific chromosome conformations. Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11946-51
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory