Gm13556 Gene Detail

Summary

• Symbol
  Gm13556
• Name
  predicted gene 13556

• Feature Type
  lncRNA gene
• IDs
  MGI:3651929
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:38175319-38177303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 24.29 cM

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651929	lncRNA gene	Chr2:38175319-38177303 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003554	antisense lncRNA gene	Chr2:37026932-37028916 (+)
A/J	MGP_AJ_G0003534	antisense lncRNA gene	Chr2:35506972-35508956 (+)
AKR/J	MGP_AKRJ_G0003513	antisense lncRNA gene	Chr2:36675597-36677581 (+)
BALB/cJ	MGP_BALBcJ_G0003523	antisense lncRNA gene	Chr2:35559367-35561351 (+)
C3H/HeJ	MGP_C3HHeJ_G0003471	antisense lncRNA gene	Chr2:36596385-36598369 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003661	antisense lncRNA gene	Chr2:38063780-38065764 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003171	antisense lncRNA gene	Chr2:34161072-34163073 (+)
CAST/EiJ	MGP_CASTEiJ_G0003434	antisense lncRNA gene	Chr2:36537128-36539106 (+)
CBA/J	MGP_CBAJ_G0003468	antisense lncRNA gene	Chr2:39496283-39498267 (+)
DBA/2J	MGP_DBA2J_G0003476	antisense lncRNA gene	Chr2:35255240-35257224 (+)
FVB/NJ	MGP_FVBNJ_G0003495	antisense lncRNA gene	Chr2:35121567-35123551 (+)
LP/J	MGP_LPJ_G0003549	antisense lncRNA gene	Chr2:36910590-36912574 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003483	antisense lncRNA gene	Chr2:39113859-39115843 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003664	antisense lncRNA gene	Chr2:36567299-36569283 (+)
PWK/PhJ	MGP_PWKPhJ_G0003389	antisense lncRNA gene	Chr2:35153047-35155031 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003334	antisense lncRNA gene	Chr2:36685181-36687172 (+)
WSB/EiJ	MGP_WSBEiJ_G0003469	antisense lncRNA gene	Chr2:36736334-36738318 (+)

Homology

• Gene Tree
  Gm13556
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087294 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087294	Ensembl Gene Model | MGI Sequence Detail	1985	C57BL/6J
transcript	ENSMUST00000132692	Ensembl | MGI Sequence Detail	1412	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;