Gm12873 Pseudogene Detail

Summary

• Symbol
  Gm12873
• Name
  predicted gene 12873

• Feature Type
  pseudogene
• IDs
  MGI:3651900
  NCBI Gene: 102632555
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:122671947-122687542 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.26 cM

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651900	pseudogene	Chr4:122665268-122687572 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040380	pseudogene	Chr4:124155748-124171339 (-)
A/J	MGP_AJ_G0040359	pseudogene	Chr4:119313842-119328592 (-)
AKR/J	MGP_AKRJ_G0040288	pseudogene	Chr4:122522872-122548050 (-)
BALB/cJ	MGP_BALBcJ_G0040362	pseudogene	Chr4:119891732-119907327 (-)
C3H/HeJ	MGP_C3HHeJ_G0039985	pseudogene	Chr4:122652759-122670862 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040964	pseudogene	Chr4:128953853-128967408 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037349	pseudogene	Chr4:112563914-112573042 (-)
CAST/EiJ	MGP_CASTEiJ_G0039057	pseudogene	Chr4:120631509-120650621 (-)
CBA/J	MGP_CBAJ_G0039950	pseudogene	Chr4:132219908-132239055 (-)
DBA/2J	MGP_DBA2J_G0040156	pseudogene	Chr4:119836528-119847042 (-)
FVB/NJ	MGP_FVBNJ_G0040112	pseudogene	Chr4:118441273-118456858 (-)
LP/J	MGP_LPJ_G0040202	pseudogene	Chr4:124430490-124449323 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040104	pseudogene	Chr4:137193018-137207474 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041055	pseudogene	Chr4:122898250-122913846 (-)
PWK/PhJ	MGP_PWKPhJ_G0038744	pseudogene	Chr4:116212104-116231075 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038449	pseudogene	Chr4:118721613-118731544 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12873
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12873
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000083494 (Evidence)
• NCBI Gene
  102632555

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083494	Ensembl Gene Model | MGI Sequence Detail	15596	C57BL/6J
transcript	ENSMUST00000119988	Ensembl | MGI Sequence Detail	422	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12873:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43202	Chr4:122687559-122687577 (-)	-26 bp