Gm12882 Pseudogene Detail

Summary

• Symbol
  Gm12882
• Name
  predicted gene 12882

• Feature Type
  pseudogene
• IDs
  MGI:3651897
  NCBI Gene: 100042174
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:120971986-120972502 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 56.80 cM

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651897	pseudogene	Chr4:120971967-120972502 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012856	pseudogene	Chr4:122422807-122426397 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0012820	pseudogene	Chr4:118207655-118208365 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013159	pseudogene	Chr4:127029521-127030037 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011412	pseudogene	Chr4:111628268-111628778 (-)
CAST/EiJ	MGP_CASTEiJ_G0012427	pseudogene	Chr4:119083823-119084345 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012716	pseudogene	Chr4:118172490-118174498 (-)
FVB/NJ	MGP_FVBNJ_G0012719	pseudogene	Chr4:116686943-116687531 (-)
LP/J	MGP_LPJ_G0012792	pseudogene	Chr4:122550273-122554752 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012730	pseudogene	Chr4:135285542-135286267 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013171	pseudogene	Chr4:121255238-121255740 (-)
PWK/PhJ	MGP_PWKPhJ_G0012247	pseudogene	Chr4:115116297-115116886 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012455	pseudogene	Chr4:121278366-121278868 (-)

Homology

• Gene Tree
  Gm12882
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12882
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000081423 (Evidence)
• NCBI Gene
  100042174

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081423	Ensembl Gene Model | MGI Sequence Detail	517	C57BL/6J
transcript	ENSMUST00000121696	Ensembl | MGI Sequence Detail	517	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12882:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43194	Chr4:120972540-120972541 (-)	-39 bp