Gm12861 Gene Detail

Summary

• Symbol
  Gm12861
• Name
  predicted gene 12861

• Feature Type
  lncRNA gene
• IDs
  MGI:3651891
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:118828494-118856655 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 55.25 cM

Strain
Comparison

• SNPs within 2kb
  238 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651891	lncRNA gene	Chr4:118828494-118856655 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015571	unclassified non-coding RNA gene	Chr4:120120698-120165725 (+)
A/J	MGP_AJ_G0015548	unclassified non-coding RNA gene	Chr4:115418112-115448803 (+)
AKR/J	MGP_AKRJ_G0015512	unclassified non-coding RNA gene	Chr4:117930814-117958593 (+)
BALB/cJ	MGP_BALBcJ_G0015510	unclassified non-coding RNA gene	Chr4:116037670-116067120 (+)
C3H/HeJ	MGP_C3HHeJ_G0015332	unclassified non-coding RNA gene	Chr4:119490796-119520279 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015963	unclassified non-coding RNA gene	Chr4:124698289-124737320 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013699	unclassified non-coding RNA gene	Chr4:109528100-109551545 (+)
CAST/EiJ	MGP_CASTEiJ_G0014887	unclassified non-coding RNA gene	Chr4:116802651-116833305 (+)
CBA/J	MGP_CBAJ_G0015313	unclassified non-coding RNA gene	Chr4:128061785-128090497 (+)
DBA/2J	MGP_DBA2J_G0015407	unclassified non-coding RNA gene	Chr4:116011360-116040566 (+)
FVB/NJ	MGP_FVBNJ_G0015414	unclassified non-coding RNA gene	Chr4:114523849-114551752 (+)
LP/J	MGP_LPJ_G0015487	unclassified non-coding RNA gene	Chr4:120241172-120269197 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015437	unclassified non-coding RNA gene	Chr4:132953474-132983402 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016005	unclassified non-coding RNA gene	Chr4:119003162-119034012 (+)
PWK/PhJ	MGP_PWKPhJ_G0014672	unclassified non-coding RNA gene	Chr4:112930125-112959997 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014461	unclassified non-coding RNA gene	Chr4:115412595-115439888 (+)
WSB/EiJ	MGP_WSBEiJ_G0014992	unclassified non-coding RNA gene	Chr4:118999888-119029452 (+)

Homology

• Gene Tree
  Gm12861
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12861
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085895 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085895	Ensembl Gene Model | MGI Sequence Detail	28162	C57BL/6J
transcript	ENSMUST00000145395	Ensembl | MGI Sequence Detail	681	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12