Rps13-ps8 Pseudogene Detail

Summary

• Symbol
  Rps13-ps8
• Name
  ribosmal protein S13, pseudogene 8
• Synonyms
  Gm13636

• Feature Type
  pseudogene
• IDs
  MGI:3651805
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:72375556-72375956 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.35 cM

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651805	pseudogene	Chr2:72375556-72375956 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011693	pseudogene	Chr2:72738619-72739019 (+)
A/J	MGP_AJ_G0011689	pseudogene	Chr2:69881514-69881914 (+)
AKR/J	MGP_AKRJ_G0011655	pseudogene	Chr2:71822741-71823141 (+)
BALB/cJ	MGP_BALBcJ_G0011670	pseudogene	Chr2:70094397-70094797 (+)
C3H/HeJ	MGP_C3HHeJ_G0011556	pseudogene	Chr2:72010107-72010507 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011964	pseudogene	Chr2:74923291-74923691 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010476	pseudogene	Chr2:67127724-67128108 (+)
CAST/EiJ	MGP_CASTEiJ_G0011344	pseudogene	Chr2:72223338-72223725 (+)
CBA/J	MGP_CBAJ_G0011529	pseudogene	Chr2:77661360-77661760 (+)
DBA/2J	MGP_DBA2J_G0011581	pseudogene	Chr2:69510760-69511160 (+)
FVB/NJ	MGP_FVBNJ_G0011586	pseudogene	Chr2:68921562-68921962 (+)
LP/J	MGP_LPJ_G0011649	pseudogene	Chr2:72623045-72623445 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011586	pseudogene	Chr2:79609707-79610107 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011957	pseudogene	Chr2:71894225-71894625 (+)
PWK/PhJ	MGP_PWKPhJ_G0011201	pseudogene	Chr2:69398511-69398898 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011024	pseudogene	Chr2:72105771-72106155 (+)
WSB/EiJ	MGP_WSBEiJ_G0011372	pseudogene	Chr2:72350080-72350480 (+)

Homology

• Gene Tree
  Rps13-ps8
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Targeted
  5
• Genomic Mutations
  6 involving Rps13-ps8
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081538 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081538	Ensembl Gene Model | MGI Sequence Detail	401	C57BL/6J
transcript	ENSMUST00000118906	Ensembl | MGI Sequence Detail	401	Not Applicable

References

• Summaries
  All 16

  Phenotypes 13
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729

TSS for Rps13-ps8:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18355	Chr2:72375526-72375530 (+)	-28 bp