Plxna4os3 Gene Detail

Summary

• Symbol
  Plxna4os3
• Name
  plexin A4, opposite strand 3
• Synonyms
  Gm13851

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3651753
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:32280764-32293549 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 13.03 cM

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651753	antisense lncRNA gene	Chr6:32280764-32293549 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004245	antisense lncRNA gene	Chr6:30296530-30310490 (+)
A/J	MGP_AJ_G0004223	antisense lncRNA gene	Chr6:28982728-28995470 (+)
AKR/J	MGP_AKRJ_G0004204	antisense lncRNA gene	Chr6:29968383-29981134 (+)
BALB/cJ	MGP_BALBcJ_G0004210	antisense lncRNA gene	Chr6:29114287-29127409 (+)
C3H/HeJ	MGP_C3HHeJ_G0004158	antisense lncRNA gene	Chr6:29950978-29964695 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004359	antisense lncRNA gene	Chr6:31091807-31107554 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003832	antisense lncRNA gene	Chr6:27131107-27143636 (+)
CAST/EiJ	MGP_CASTEiJ_G0004120	antisense lncRNA gene	Chr6:29743301-29755832 (+)
CBA/J	MGP_CBAJ_G0004152	antisense lncRNA gene	Chr6:32291134-32303887 (+)
DBA/2J	MGP_DBA2J_G0004168	antisense lncRNA gene	Chr6:28886251-28899000 (+)
FVB/NJ	MGP_FVBNJ_G0004184	antisense lncRNA gene	Chr6:28677138-28689829 (+)
LP/J	MGP_LPJ_G0004246	antisense lncRNA gene	Chr6:30442178-30457705 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004174	antisense lncRNA gene	Chr6:34658704-34671450 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004356	antisense lncRNA gene	Chr6:29846051-29858797 (+)
PWK/PhJ	MGP_PWKPhJ_G0004073	antisense lncRNA gene	Chr6:28468722-28481657 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004017	antisense lncRNA gene	Chr6:29540951-29554756 (+)
WSB/EiJ	MGP_WSBEiJ_G0004156	antisense lncRNA gene	Chr6:29773660-29786475 (+)

Homology

• Gene Tree
  Plxna4os3
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086720 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086720	Ensembl Gene Model | MGI Sequence Detail	12786	C57BL/6J
transcript	ENSMUST00000143328	Ensembl | MGI Sequence Detail	277	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;