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Gm12657 Pseudogene Detail
Summary
  • Symbol
    Gm12657
  • Name
    predicted gene 12657
Location &
Maps
more
  • Sequence Map
    Chr4:94599385-94599795 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 43.34 cM
Strain
Comparison
more
  • SNPs within 2kb
    48 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651714
pseudogene Chr4:94593650-94600319 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0011580
pseudogene Chr2:30823908-30824317 (-)
AKR/J MGP_AKRJ_G0011545
pseudogene Chr2:31925187-31925596 (-)
BALB/cJ MGP_BALBcJ_G0011561
pseudogene Chr2:30939863-30940272 (-)
C3H/HeJ MGP_C3HHeJ_G0011445
pseudogene Chr2:31801921-31804168 (-)
C57BL/6NJ MGP_C57BL6NJ_G0014199
pseudogene Chr7:15126872-15127278 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0011418
pseudogene Chr2:34430479-34430888 (-)
DBA/2J MGP_DBA2J_G0011475
pseudogene Chr2:30602101-30602510 (-)
FVB/NJ MGP_FVBNJ_G0011475
pseudogene Chr2:30488708-30489117 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0011475
pseudogene Chr2:33981808-33982217 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0014177
pseudogene Chr7:14227346-14227752 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    H3-5, H3.5 histone
  • Vertebrate Orthologs
    15
  • Human Ortholog
    H3-5, H3.5 histone
    Orthology source: HomoloGene
  • Synonyms
    H3.5, H3F3C
  • Links
    NCBI Gene ID: 440093
    neXtProt AC: NX_Q6NXT2
    UniProt: Q6NXT2

  • Chr Location
    12p11.21; chr12:31791185-31792241 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Genomic Mutations
    3 involving Gm12657
  • Find Mice (IMSR)
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063314 Ensembl Gene Model | MGI Sequence Detail 411 C57BL/6J ±  kb
transcript ENSMUST00000119560 Ensembl | MGI Sequence Detail 411 Not Applicable  
polypeptide NP_001074488 RefSeq | MGI Sequence Detail 136 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 9
    Phenotypes 3
  • Earliest
    J:224673 Maehara K, et al., Tissue-specific expression of histone H3 variants diversified after species separation. Epigenetics Chromatin. 2015;8:35

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/20/2020
MGI 6.16
The Jackson Laboratory