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H3f5 Pseudogene Detail
Summary
  • Symbol
    H3f5
  • Name
    H3.5 histone
  • Synonyms
    Gm12657
Location &
Maps
more
  • Sequence Map
    Chr4:94487622-94488032 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 43.34 cM
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651714
 pseudogene Chr4:94481887-94488556 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0011580
 pseudogene Chr2:30823908-30824317 (-)
AKR/J MGP_AKRJ_G0011545
 pseudogene Chr2:31925187-31925596 (-)
BALB/cJ MGP_BALBcJ_G0011561
 pseudogene Chr2:30939863-30940272 (-)
C3H/HeJ MGP_C3HHeJ_G0011445
 pseudogene Chr2:31801921-31804168 (-)
C57BL/6NJ MGP_C57BL6NJ_G0014199
 pseudogene Chr7:15126872-15127278 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0011418
 pseudogene Chr2:34430479-34430888 (-)
DBA/2J MGP_DBA2J_G0011475
 pseudogene Chr2:30602101-30602510 (-)
FVB/NJ MGP_FVBNJ_G0011475
 pseudogene Chr2:30488708-30489117 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0011475
 pseudogene Chr2:33981808-33982217 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0014177
 pseudogene Chr7:14227346-14227752 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    H3-5, H3.5 histone
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    H3-5, H3.5 histone
  • Synonyms
    H3.3C, H3.5, H3F3C
  • Links
    NCBI Gene ID: 440093
    neXtProt AC: NX_Q6NXT2
    UniProt: Q6NXT2

  • Chr Location
    12p11.21; chr12:31791185-31792298 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    16
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000063314 Ensembl Gene Model | MGI Sequence Detail 411 C57BL/6J ±  kb
transcript ENSMUST00000119560 Ensembl | MGI Sequence Detail 411 Not Applicable  
polypeptide NP_001074488 RefSeq | MGI Sequence Detail 136 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 10
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:224673 Maehara K, et al., Tissue-specific expression of histone H3 variants diversified after species separation. Epigenetics Chromatin. 2015;8:35
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory