Gm13216 Pseudogene Detail

Summary

• Symbol
  Gm13216
• Name
  predicted gene 13216

• Feature Type
  pseudogene
• IDs
  MGI:3651709
  NCBI Gene: 666599
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:5608382-5608972 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 3.59 cM

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651709	pseudogene	Chr2:5608364-5609065 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011515	pseudogene	Chr2:2719672-2720263 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0010321	pseudogene	Chr2:2415192-2415786 (+)
CAST/EiJ	MGP_CASTEiJ_G0011175	pseudogene	Chr2:2678014-2679650 (+)
CBA/J	MGP_CBAJ_G0011348	pseudogene	Chr2:2906285-2906886 (+)
DBA/2J	MGP_DBA2J_G0011405	pseudogene	Chr2:2552804-2553350 (+)
FVB/NJ	MGP_FVBNJ_G0011409	pseudogene	Chr2:2533889-2534650 (+)
LP/J	MGP_LPJ_G0011471	pseudogene	Chr2:2694344-2694965 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011768	pseudogene	Chr2:2655963-2656650 (+)
PWK/PhJ	MGP_PWKPhJ_G0010956	pseudogene	Chr18:20880938-20881577 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010862	pseudogene	Chr2:2660366-2660957 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13216
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000082013 (Evidence)
• NCBI Gene
  666599

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082013	Ensembl Gene Model | MGI Sequence Detail	591	C57BL/6J
transcript	ENSMUST00000117145	Ensembl | MGI Sequence Detail	591	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13216:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16004	Chr2:5608362-5608376 (+)	-13 bp