Gm12438 Pseudogene Detail

Summary

• Symbol
  Gm12438
• Name
  predicted gene 12438

• Feature Type
  pseudogene
• IDs
  MGI:3651707
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:48745515-48745850 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 26.27 cM

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651707	pseudogene	Chr4:48745515-48745850 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012642	pseudogene	Chr4:47182762-47183097 (-)
A/J	MGP_AJ_G0012631	pseudogene	Chr4:45436109-45436444 (-)
AKR/J	MGP_AKRJ_G0012600	pseudogene	Chr4:46609003-46609338 (-)
BALB/cJ	MGP_BALBcJ_G0012615	pseudogene	Chr4:45549571-45549906 (-)
C3H/HeJ	MGP_C3HHeJ_G0012477	pseudogene	Chr4:47169241-47169576 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012936	pseudogene	Chr4:48894130-48894465 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011251	pseudogene	Chr4:42764977-42765308 (-)
CAST/EiJ	MGP_CASTEiJ_G0012231	pseudogene	Chr4:46762929-46763265 (-)
CBA/J	MGP_CBAJ_G0012457	pseudogene	Chr4:50476500-50476835 (-)
DBA/2J	MGP_DBA2J_G0012513	pseudogene	Chr4:45313718-45314053 (-)
FVB/NJ	MGP_FVBNJ_G0012514	pseudogene	Chr4:44576412-44576747 (-)
LP/J	MGP_LPJ_G0012583	pseudogene	Chr4:47250237-47250572 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012520	pseudogene	Chr4:53473467-53473802 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012937	pseudogene	Chr4:46787563-46787898 (-)
PWK/PhJ	MGP_PWKPhJ_G0012061	pseudogene	Chr4:45445918-45446254 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011875	pseudogene	Chr4:46308852-46309187 (-)
WSB/EiJ	MGP_WSBEiJ_G0012253	pseudogene	Chr4:46725091-46725426 (-)

Homology

• Gene Tree
  Gm12438
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083091 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083091	Ensembl Gene Model | MGI Sequence Detail	336	C57BL/6J
transcript	ENSMUST00000122034	Ensembl | MGI Sequence Detail	336	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;