Gm11928 Pseudogene Detail

Summary

• Symbol
  Gm11928
• Name
  predicted gene 11928

• Feature Type
  pseudogene
• IDs
  MGI:3651635
  NCBI Gene: 665228
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:32149786-32150222 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 13.98 cM

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651635	pseudogene	Chr4:32149786-32150222 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012589	pseudogene	Chr4:29591836-29592272 (+)
A/J	MGP_AJ_G0012580	pseudogene	Chr4:28541465-28541901 (+)
AKR/J	MGP_AKRJ_G0012546	pseudogene	Chr4:29288241-29288677 (+)
BALB/cJ	MGP_BALBcJ_G0012566	pseudogene	Chr4:28784687-28785123 (+)
C3H/HeJ	MGP_C3HHeJ_G0012428	pseudogene	Chr4:29566229-29566665 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012882	pseudogene	Chr4:30773078-30773514 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011211	pseudogene	Chr4:26600359-26600794 (+)
CAST/EiJ	MGP_CASTEiJ_G0012183	pseudogene	Chr4:29332960-29333396 (+)
CBA/J	MGP_CBAJ_G0012406	pseudogene	Chr4:31742670-31743106 (+)
DBA/2J	MGP_DBA2J_G0012459	pseudogene	Chr4:28552062-28552498 (+)
FVB/NJ	MGP_FVBNJ_G0012463	pseudogene	Chr4:27973661-27974097 (+)
LP/J	MGP_LPJ_G0012533	pseudogene	Chr4:29678402-29678838 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012467	pseudogene	Chr4:34364844-34365280 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012882	pseudogene	Chr4:29281865-29282301 (+)
PWK/PhJ	MGP_PWKPhJ_G0012014	pseudogene	Chr4:28505202-28505638 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011833	pseudogene	Chr4:29146463-29146901 (+)
WSB/EiJ	MGP_WSBEiJ_G0012208	pseudogene	Chr4:29290699-29291135 (+)

Homology

• Gene Tree
  Gm11928
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm11928
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083872 (Evidence)
• NCBI Gene
  665228

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083872	Ensembl Gene Model | MGI Sequence Detail	437	C57BL/6J
transcript	ENSMUST00000119323	Ensembl | MGI Sequence Detail	437	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11928:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36663	Chr4:32149458-32149486 (+)	-314 bp