Tmc4-ps Pseudogene Detail

Summary

• Symbol
  Tmc4-ps
• Name
  Tmc4 retrotransposed pseudogene
• Synonyms
  Gm12483

• Feature Type
  pseudogene
• IDs
  MGI:3651628
  NCBI Gene: 102636091
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:52443915-52444172 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 28.31 cM

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651628	pseudogene	Chr4:52443748-52445426 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012655	pseudogene	Chr4:51026216-51026473 (-)
A/J	MGP_AJ_G0012643	pseudogene	Chr4:49066840-49067097 (-)
AKR/J	MGP_AKRJ_G0012613	pseudogene	Chr4:50415826-50416083 (-)
BALB/cJ	MGP_BALBcJ_G0012626	pseudogene	Chr4:49248464-49248721 (-)
C3H/HeJ	MGP_C3HHeJ_G0012487	pseudogene	Chr4:50966714-50966971 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012952	pseudogene	Chr4:52906731-52906988 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011260	pseudogene	Chr4:46074390-46074645 (-)
CAST/EiJ	MGP_CASTEiJ_G0012244	pseudogene	Chr4:50583718-50583975 (-)
CBA/J	MGP_CBAJ_G0012467	pseudogene	Chr4:54724373-54724630 (-)
DBA/2J	MGP_DBA2J_G0012525	pseudogene	Chr4:49044041-49044298 (-)
FVB/NJ	MGP_FVBNJ_G0012525	pseudogene	Chr4:48282461-48282718 (-)
LP/J	MGP_LPJ_G0012596	pseudogene	Chr4:51121480-51121737 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012533	pseudogene	Chr4:57935024-57935281 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012955	pseudogene	Chr4:50651897-50652154 (-)
PWK/PhJ	MGP_PWKPhJ_G0012071	pseudogene	Chr4:48989752-48990009 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011885	pseudogene	Chr4:49938874-49939131 (-)
WSB/EiJ	MGP_WSBEiJ_G0012266	pseudogene	Chr4:50537639-50537896 (-)

Homology

• Gene Tree
  Tmc4-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084380 (Evidence)
• NCBI Gene
  102636091

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084380	Ensembl Gene Model | MGI Sequence Detail	258	C57BL/6J
transcript	ENSMUST00000117819	Ensembl | MGI Sequence Detail	258	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Tmc4-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41708	Chr4:52445415-52445440 (-)	-1,256 bp