Gm13397 Pseudogene Detail

Summary

• Symbol
  Gm13397
• Name
  predicted gene 13397

• Feature Type
  pseudogene
• IDs
  MGI:3651605
  NCBI Gene: 665315
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:26924692-26925569 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 19.19 cM

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651605	pseudogene	Chr2:26924640-26925604 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011572	pseudogene	Chr2:25006948-25007825 (+)
A/J	MGP_AJ_G0011569	pseudogene	Chr2:24059127-24060004 (+)
AKR/J	MGP_AKRJ_G0011534	pseudogene	Chr2:24851855-24852732 (+)
BALB/cJ	MGP_BALBcJ_G0011549	pseudogene	Chr2:24178874-24179751 (+)
C3H/HeJ	MGP_C3HHeJ_G0011434	pseudogene	Chr2:24789179-24790056 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011841	pseudogene	Chr2:25856672-25858173 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010376	pseudogene	Chr2:22896590-22897454 (+)
CAST/EiJ	MGP_CASTEiJ_G0011235	pseudogene	Chr2:24665733-24666609 (+)
CBA/J	MGP_CBAJ_G0011407	pseudogene	Chr2:26752658-26753535 (+)
DBA/2J	MGP_DBA2J_G0011465	pseudogene	Chr2:23878314-23879191 (+)
FVB/NJ	MGP_FVBNJ_G0011465	pseudogene	Chr2:23638866-23639744 (+)
LP/J	MGP_LPJ_G0011529	pseudogene	Chr2:24951981-24952858 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011464	pseudogene	Chr2:26798039-26798916 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011829	pseudogene	Chr2:24789947-24790824 (+)
PWK/PhJ	MGP_PWKPhJ_G0011094	pseudogene	Chr2:23670213-23672399 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010914	pseudogene	Chr2:24935854-24936722 (+)
WSB/EiJ	MGP_WSBEiJ_G0011258	pseudogene	Chr2:24902684-24903561 (+)

Homology

• Gene Tree
  Gm13397
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083335 (Evidence)
• NCBI Gene
  665315

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083335	Ensembl Gene Model | MGI Sequence Detail	878	C57BL/6J
transcript	ENSMUST00000119562	Ensembl | MGI Sequence Detail	878	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13397:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16836	Chr2:26924669-26924680 (+)	-17 bp