Gm11685 Gene Detail

Summary

• Symbol
  Gm11685
• Name
  predicted gene 11685
• Synonyms
  Gm29875

• Feature Type
  lncRNA gene
• IDs
  MGI:3651603
  NCBI Gene: 102631572
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:109504204-109532615 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 72.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651603	lncRNA gene	Chr11:109504013-109532989 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005305	lincRNA gene	Chr11:113188614-113216492 (+)
A/J	MGP_AJ_G0005288	lincRNA gene	Chr11:108289399-108314773 (+)
AKR/J	MGP_AKRJ_G0005267	lincRNA gene	Chr11:111545446-111573508 (+)
BALB/cJ	MGP_BALBcJ_G0005270	lincRNA gene	Chr11:108720870-108746445 (+)
C3H/HeJ	MGP_C3HHeJ_G0005219	lincRNA gene	Chr11:111842337-111868283 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005422	lincRNA gene	Chr11:116612698-116639434 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004813	lincRNA gene	Chr11:105512958-105537970 (+)
CAST/EiJ	MGP_CASTEiJ_G0005166	lincRNA gene	Chr11:112977636-113007673 (+)
CBA/J	MGP_CBAJ_G0005208	lincRNA gene	Chr11:121435604-121460947 (+)
DBA/2J	MGP_DBA2J_G0005226	lincRNA gene	Chr11:107767936-107793333 (+)
FVB/NJ	MGP_FVBNJ_G0005251	lincRNA gene	Chr11:107255237-107280612 (+)
LP/J	MGP_LPJ_G0005307	lincRNA gene	Chr11:113600763-113628312 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005233	lincRNA gene	Chr11:120570309-120598301 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005426	lincRNA gene	Chr11:112105451-112131962 (+)
PWK/PhJ	MGP_PWKPhJ_G0005115	lincRNA gene	Chr11:108935404-108960352 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005036	lincRNA gene	Chr11:111885192-111914983 (+)
WSB/EiJ	MGP_WSBEiJ_G0005214	lincRNA gene	Chr11:112029262-112055532 (+)

Homology

• Gene Tree
  Gm11685
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000086733 (Evidence)
• NCBI Gene
  102631572

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086733	Ensembl Gene Model | MGI Sequence Detail	28412	C57BL/6J
transcript	ENSMUST00000242918	Ensembl | MGI Sequence Detail	1810	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5589034

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11685:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105686	Chr11:109504240-109504251 (+)	42 bp
Tssr105687	Chr11:109504268-109504286 (+)	73 bp
Tssr105688	Chr11:109506950-109506977 (+)	2,760 bp