Gm12239 Gene Detail

Summary

• Symbol
  Gm12239
• Name
  predicted gene 12239

• Feature Type
  lncRNA gene
• IDs
  MGI:3651547
  NCBI Gene: 115485826
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:55858814-55991508 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 33.28 cM

Strain
Comparison

• SNPs within 2kb
  4491 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651547	lncRNA gene	Chr11:55662774-56057955 (+)
129S1/SvImJ	ENSMUSG00200037285	lncRNA gene	Chr11:52664847-52964837 (+)
A/J	ENSMUSG00195043309	lncRNA gene	Chr11:52598593-52898586 (+)
AKR/J	ENSMUSG00220050333	lncRNA gene	Chr11:52793924-53094043 (+)
BALB/cJ	ENSMUSG00180051167	lncRNA gene	Chr11:52663159-52963215 (+)
C3H/HeJ	ENSMUSG00175048422	lncRNA gene	Chr11:52629742-52933810 (+)
C57BL/6NJ	ENSMUSG00215039549	lncRNA gene	Chr11:52452113-52752173 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002614	antisense lncRNA gene	Chr11:50667289-50971542 (+)
CAST/EiJ	ENSTCUG00005047614	lncRNA gene	Chr11:52216271-52513034 (+)
CBA/J	ENSMUSG00210042631	lncRNA gene	Chr11:52485654-52785554 (+)
DBA/2J	ENSMUSG00185046619	lncRNA gene	Chr11:52688325-52988458 (+)
FVB/NJ	ENSMUSG00205051764	lncRNA gene	Chr11:52557248-52857825 (+)
JF1/MsJ	ENSUMUG00000051772	lncRNA gene	Chr11:53062604-53363028 (+)
LP/J	ENSMUSG00230050182	lncRNA gene	Chr11:53878721-54178609 (+)
NOD/ShiLtJ	ENSMUSG00190051476	lncRNA gene	Chr11:52741041-53041002 (+)
NZO/HlLtJ	ENSMUSG00225032873	lncRNA gene	Chr11:55914739-56214908 (+)
PWK/PhJ	ENSLUMG00010034805	lncRNA gene	Chr11:52511392-52804869 (+)
SPRET/EiJ	ENSMSPG00010043661	lncRNA gene	Chr11:53235896-53557167 (+)
WSB/EiJ	ENSIUOG00005038387	lncRNA gene	Chr11:52534237-52837942 (+)

Homology

• Gene Tree
  Gm12239
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm12239
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  4

• Ensembl
  ENSMUSG00000086020 (Evidence)
• NCBI Gene
  115485826

Representative Sequences			Length	Strain/Species
genomic	115485826	NCBI Gene Model | MGI Sequence Detail	132695	C57BL/6J
transcript	XR_004937275	RefSeq | MGI Sequence Detail	13169	C57BL/6J

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:155870 Barlow JL, et al., A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q- syndrome. Nat Med. 2010 Jan;16(1):59-66

TSS for Gm12239:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101627	Chr11:55963736-55963744 (+)	104,926 bp