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Gm12239 Gene Detail
Summary
  • Symbol
    Gm12239
  • Name
    predicted gene 12239
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3651547
    NCBI Gene: 115485826
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:55858814-55991508 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 33.28 cM
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651547
lncRNA gene Chr11:55662914-55991508 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002965
antisense lncRNA gene Chr11:55322259-55644930 (+)
A/J MGP_AJ_G0002942
antisense lncRNA gene Chr11:53263488-53560994 (+)
AKR/J MGP_AKRJ_G0002923
antisense lncRNA gene Chr11:55001866-55318372 (+)
BALB/cJ MGP_BALBcJ_G0002930
antisense lncRNA gene Chr11:53587006-53898468 (+)
C3H/HeJ MGP_C3HHeJ_G0002885
antisense lncRNA gene Chr11:54932435-55265976 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003071
antisense lncRNA gene Chr11:56991645-57324607 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002614
antisense lncRNA gene Chr11:50667289-50971542 (+)
CAST/EiJ MGP_CASTEiJ_G0002856
antisense lncRNA gene Chr11:54999188-55315373 (+)
CBA/J MGP_CBAJ_G0002882
antisense lncRNA gene Chr11:59702585-60044470 (+)
DBA/2J MGP_DBA2J_G0002889
antisense lncRNA gene Chr11:52937799-53242523 (+)
FVB/NJ MGP_FVBNJ_G0002907
antisense lncRNA gene Chr11:52607769-52915287 (+)
LP/J MGP_LPJ_G0002964
antisense lncRNA gene Chr11:55779711-56107327 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002895
antisense lncRNA gene Chr11:60867906-61207771 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003075
antisense lncRNA gene Chr11:55036874-55358820 (+)
PWK/PhJ MGP_PWKPhJ_G0002814
antisense lncRNA gene Chr11:53524487-53826476 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002763
antisense lncRNA gene Chr11:54838894-55196240 (+)
WSB/EiJ MGP_WSBEiJ_G0002885
antisense lncRNA gene Chr11:54662265-54985329 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 115485826 NCBI Gene Model | MGI Sequence Detail 132695 C57BL/6J ±  kb
transcript XR_004937275 RefSeq | MGI Sequence Detail 13169 C57BL/6J  
For the selected sequence
References
more
  • Summaries
    All 10
    Diseases 1
    Phenotypes 4
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:155870 Barlow JL, et al., A p53-dependent mechanism underlies macrocytic anemia in a mouse model of human 5q- syndrome. Nat Med. 2010 Jan;16(1):59-66

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/28/2022
MGI 6.20
The Jackson Laboratory