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Susd1 Gene Detail
Summary
  • Symbol
    Susd1
  • Name
    sushi domain containing 1
  • Synonyms
    Gm12528
  • Feature Type
    protein coding gene
  • IDs
    MGI:3651543
    NCBI Gene: 634731
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:59314683-59438633 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 32.50 cM
Strain
Comparison
more
  • SNPs within 2kb
    1078 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651543
protein coding gene Chr4:59314202-59439293 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028335
protein coding gene Chr4:58211739-58342086 (-)
A/J MGP_AJ_G0028296
protein coding gene Chr4:55978263-56099881 (-)
AKR/J MGP_AKRJ_G0028245
protein coding gene Chr4:57542369-57665872 (-)
BALB/cJ MGP_BALBcJ_G0028315
protein coding gene Chr4:56144437-56273893 (-)
C3H/HeJ MGP_C3HHeJ_G0028036
protein coding gene Chr4:58079196-58203975 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028756
protein coding gene Chr4:60253174-60381824 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026062
protein coding gene Chr4:52708059-52831138 (-)
CAST/EiJ MGP_CASTEiJ_G0027474
protein coding gene Chr4:57792730-57920443 (-)
CBA/J MGP_CBAJ_G0028001
protein coding gene Chr4:62290556-62433023 (-)
DBA/2J MGP_DBA2J_G0028151
protein coding gene Chr4:55876388-56000093 (-)
FVB/NJ MGP_FVBNJ_G0028118
protein coding gene Chr4:55081941-55206321 (-)
LP/J MGP_LPJ_G0028250
protein coding gene Chr4:58312138-58434838 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028142
protein coding gene Chr4:65422882-65550967 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028792
protein coding gene Chr4:57724169-57851444 (-)
PWK/PhJ MGP_PWKPhJ_G0027199
protein coding gene Chr4:55909566-56032043 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027027
protein coding gene Chr4:57048103-57177714 (-)
WSB/EiJ MGP_WSBEiJ_G0027552
protein coding gene Chr4:57710974-57835198 (-)



Homology
more
  • Human Ortholog
    SUSD1, sushi domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SUSD1, sushi domain containing 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 64420
    neXtProt AC: NX_Q6UWL2
    UniProt: Q6UWL2

  • Chr Location
    9q31.3-q32; chr9:112040781-112175520 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotype references
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038578 Ensembl Gene Model | MGI Sequence Detail 123951 C57BL/6J ±  kb
transcript ENSMUST00000040166 Ensembl | MGI Sequence Detail 3295 Not Applicable  
polypeptide ENSMUSP00000048201 Ensembl | MGI Sequence Detail 752 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    4 Sequences
  • InterPro Domains
    IPR018097 EGF-like calcium-binding, conserved site
    IPR001881 EGF-like calcium-binding domain
    IPR013032 EGF-like, conserved site
    IPR000742 EGF-like domain
    IPR000152 EGF-type aspartate/asparagine hydroxylation site
    IPR009030 Growth factor receptor cysteine-rich domain superfamily
    IPR000436 Sushi/SCR/CCP domain
    IPR035976 Sushi/SCR/CCP superfamily
Molecular
Reagents
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  • All nucleic 7
    cDNA 7

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Phenotypes 8
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/04/2019
MGI 6.14
The Jackson Laboratory