Gm12002 Gene Detail

Summary

• Symbol
  Gm12002
• Name
  predicted gene 12002

• Feature Type
  lncRNA gene
• IDs
  MGI:3651521
  NCBI Gene: 100503630
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:12264490-12339534 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 7.30 cM

Strain
Comparison

• SNPs within 2kb
  415 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651521	lncRNA gene	Chr11:12263640-12339534 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002922	antisense lncRNA gene	Chr11:9628809-9667862 (+)
A/J	MGP_AJ_G0002899	antisense lncRNA gene	Chr11:9279599-9316746 (+)
AKR/J	MGP_AKRJ_G0002880	antisense lncRNA gene	Chr11:9657902-9693190 (+)
BALB/cJ	MGP_BALBcJ_G0002887	antisense lncRNA gene	Chr11:9316371-9353426 (+)
C3H/HeJ	MGP_C3HHeJ_G0002842	antisense lncRNA gene	Chr11:9556864-9593246 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003029	antisense lncRNA gene	Chr11:9948459-9985236 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002571	antisense lncRNA gene	Chr11:8821842-8857946 (+)
CAST/EiJ	MGP_CASTEiJ_G0002814	antisense lncRNA gene	Chr11:9578817-9615823 (+)
CBA/J	MGP_CBAJ_G0002839	antisense lncRNA gene	Chr11:10635098-10674307 (+)
DBA/2J	MGP_DBA2J_G0002846	antisense lncRNA gene	Chr11:9214010-9249986 (+)
FVB/NJ	MGP_FVBNJ_G0002865	antisense lncRNA gene	Chr11:9123115-9160187 (+)
LP/J	MGP_LPJ_G0002921	antisense lncRNA gene	Chr11:9711302-9751227 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002853	antisense lncRNA gene	Chr11:10352534-10391109 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003032	antisense lncRNA gene	Chr11:9707748-9751948 (+)
PWK/PhJ	MGP_PWKPhJ_G0002772	antisense lncRNA gene	Chr11:9247933-9286056 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002721	antisense lncRNA gene	Chr11:9537403-9579232 (+)
WSB/EiJ	MGP_WSBEiJ_G0002843	antisense lncRNA gene	Chr11:9432446-9470932 (+)

Homology

• Gene Tree
  Gm12002
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  5

• Ensembl
  ENSMUSG00000086584 (Evidence)
• NCBI Gene
  100503630

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086584	Ensembl Gene Model | MGI Sequence Detail	75045	C57BL/6J
transcript	ENSMUST00000247556	Ensembl | MGI Sequence Detail	1846	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm12002:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100396	Chr11:12264509-12264529 (+)	29 bp