Gm12509 Pseudogene Detail

Summary

• Symbol
  Gm12509
• Name
  predicted gene 12509

• Feature Type
  pseudogene
• IDs
  MGI:3651361
  NCBI Gene: 100417778
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:55163010-55163613 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 29.61 cM

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651361	pseudogene	Chr4:55163008-55163616 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012667	pseudogene	Chr4:53863239-53863847 (+)
A/J	MGP_AJ_G0012656	pseudogene	Chr4:51788540-51789148 (+)
AKR/J	MGP_AKRJ_G0012626	pseudogene	Chr4:53203663-53204271 (+)
BALB/cJ	MGP_BALBcJ_G0012639	pseudogene	Chr4:51958356-51958964 (+)
C3H/HeJ	MGP_C3HHeJ_G0012498	pseudogene	Chr4:53726116-53726724 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012965	pseudogene	Chr4:55794252-55794860 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011270	pseudogene	Chr4:48664696-48665286 (+)
CAST/EiJ	MGP_CASTEiJ_G0012254	pseudogene	Chr4:53404004-53404612 (+)
CBA/J	MGP_CBAJ_G0012478	pseudogene	Chr4:57700720-57701328 (+)
DBA/2J	MGP_DBA2J_G0012536	pseudogene	Chr4:51723279-51723887 (+)
FVB/NJ	MGP_FVBNJ_G0012537	pseudogene	Chr4:50941911-50942519 (+)
LP/J	MGP_LPJ_G0012608	pseudogene	Chr4:53954879-53955487 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012545	pseudogene	Chr4:60908357-60908965 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012968	pseudogene	Chr4:53412044-53412652 (+)
PWK/PhJ	MGP_PWKPhJ_G0012081	pseudogene	Chr4:51691497-51692105 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011894	pseudogene	Chr4:52688156-52688764 (+)
WSB/EiJ	MGP_WSBEiJ_G0012276	pseudogene	Chr4:53326895-53327503 (+)

Homology

• Gene Tree
  Gm12509
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081177 (Evidence)
• NCBI Gene
  100417778

Representative Sequences			Length	Strain/Species
genomic	100417778	NCBI Gene Model | MGI Sequence Detail	604	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;