Gm12522 Gene Detail

Summary

• Symbol
  Gm12522
• Name
  predicted gene 12522

• Feature Type
  lncRNA gene
• IDs
  MGI:3651334
  NCBI Gene: 100038453
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:108286593-108291057 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 47.00 cM

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651334	lncRNA gene	Chr3:108286593-108291057 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015518	unclassified non-coding RNA gene	Chr3:109926046-109932516 (-)
A/J	MGP_AJ_G0015495	unclassified non-coding RNA gene	Chr3:106437931-106443237 (-)
AKR/J	MGP_AKRJ_G0015459	unclassified non-coding RNA gene	Chr3:109030432-109036654 (-)
BALB/cJ	MGP_BALBcJ_G0015457	unclassified non-coding RNA gene	Chr3:106140588-106145095 (-)
C3H/HeJ	MGP_C3HHeJ_G0015280	unclassified non-coding RNA gene	Chr3:109383144-109388383 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015911	unclassified non-coding RNA gene	Chr3:114031030-114037176 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013646	unclassified non-coding RNA gene	Chr3:102587387-102591875 (-)
CAST/EiJ	MGP_CASTEiJ_G0014834	unclassified non-coding RNA gene	Chr3:108766380-108770816 (-)
CBA/J	MGP_CBAJ_G0015261	unclassified non-coding RNA gene	Chr3:117907227-117918282 (-)
DBA/2J	MGP_DBA2J_G0015355	unclassified non-coding RNA gene	Chr3:105622063-105627778 (-)
FVB/NJ	MGP_FVBNJ_G0015362	unclassified non-coding RNA gene	Chr3:103508084-103512495 (-)
LP/J	MGP_LPJ_G0015434	unclassified non-coding RNA gene	Chr3:111343984-111350930 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015386	unclassified non-coding RNA gene	Chr3:123964464-123971151 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015952	unclassified non-coding RNA gene	Chr3:108630602-108635895 (-)
PWK/PhJ	MGP_PWKPhJ_G0014620	unclassified non-coding RNA gene	Chr3:105371436-105376806 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014408	unclassified non-coding RNA gene	Chr3:106768890-106774510 (-)
WSB/EiJ	MGP_WSBEiJ_G0014940	unclassified non-coding RNA gene	Chr3:109167461-109173031 (-)

Homology

• Gene Tree
  Gm12522
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm12522
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074281 (Evidence)
• NCBI Gene
  100038453

Representative Sequences			Length	Strain/Species
genomic	100038453	NCBI Gene Model | MGI Sequence Detail	4465	C57BL/6J
transcript	NR_040560	RefSeq | MGI Sequence Detail	2439	C57BL/6
polypeptide	Q3UNE3	UniProt | EBI | MGI Sequence Detail	82	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 5
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm12522:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35142	Chr3:108289816-108289857 (-)	1,220 bp