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Gm12980 Pseudogene Detail
Summary
  • Symbol
    Gm12980
  • Name
    predicted gene 12980
Location &
Maps
more
  • Sequence Map
    Chr4:129273637-129273972 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 63.26 cM
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651320
 pseudogene Chr4:129273637-129273972 (+)
129S1/SvImJ MGP_129S1SvImJ_G0012887
 pseudogene Chr4:131294530-131294865 (+)
A/J MGP_AJ_G0012871
 pseudogene Chr4:126054285-126054620 (+)
AKR/J MGP_AKRJ_G0012842
 pseudogene Chr4:129558353-129558688 (+)
BALB/cJ MGP_BALBcJ_G0012850
 pseudogene Chr4:126647498-126647833 (+)
C3H/HeJ MGP_C3HHeJ_G0012707
 pseudogene Chr4:129616407-129616742 (+)
C57BL/6NJ MGP_C57BL6NJ_G0013190
 pseudogene Chr4:136238066-136238401 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0011437
 pseudogene Chr4:119182746-119183092 (+)
CAST/EiJ MGP_CASTEiJ_G0012456
 pseudogene Chr4:127794534-127794869 (+)
CBA/J MGP_CBAJ_G0012682
 pseudogene Chr4:139564627-139564962 (+)
DBA/2J MGP_DBA2J_G0012744
 pseudogene Chr4:126484501-126484836 (+)
FVB/NJ MGP_FVBNJ_G0012752
 pseudogene Chr4:125250225-125250560 (+)
LP/J MGP_LPJ_G0012822
 pseudogene Chr4:131573125-131573460 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0012762
 pseudogene Chr4:144447250-144447585 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0013205
 pseudogene Chr4:129934315-129934650 (+)
PWK/PhJ MGP_PWKPhJ_G0012276
 pseudogene Chr4:123072037-123072372 (+)
SPRET/EiJ MGP_SPRETEiJ_G0012090
 pseudogene Chr4:125788709-125789056 (+)
WSB/EiJ MGP_WSBEiJ_G0012484
 pseudogene Chr4:130050018-130050353 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    2
  • Gene trapped
    2
  • Radiation induced
    1
  • Genomic Mutations
    3 involving Gm12980
  • Find Mice (IMSR)
    13 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
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  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082468 Ensembl Gene Model | MGI Sequence Detail 336 C57BL/6J ±  kb
transcript ENSMUST00000118912 Ensembl | MGI Sequence Detail 336 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 9
    Phenotypes 5
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory