Gm13193 Pseudogene Detail

Summary

• Symbol
  Gm13193
• Name
  predicted gene 13193

• Feature Type
  pseudogene
• IDs
  MGI:3651271
  NCBI Gene: 102640490
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:4960880-4961104 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 3.09 cM

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651271	pseudogene	Chr2:4960878-4961173 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011511	pseudogene	Chr2:2038645-2038869 (-)
A/J	MGP_AJ_G0011507	pseudogene	Chr2:1936125-1936349 (-)
AKR/J	MGP_AKRJ_G0011472	pseudogene	Chr2:1973390-1973614 (-)
BALB/cJ	MGP_BALBcJ_G0011488	pseudogene	Chr2:1916947-1917171 (-)
C3H/HeJ	MGP_C3HHeJ_G0011374	pseudogene	Chr2:1968699-1968923 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011777	pseudogene	Chr2:2054463-2054687 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010318	pseudogene	Chr2:1788606-1788848 (-)
CAST/EiJ	MGP_CASTEiJ_G0011172	pseudogene	Chr2:1993172-1993396 (-)
CBA/J	MGP_CBAJ_G0011345	pseudogene	Chr2:2143127-2143351 (-)
DBA/2J	MGP_DBA2J_G0011401	pseudogene	Chr2:1905592-1905816 (-)
FVB/NJ	MGP_FVBNJ_G0011405	pseudogene	Chr2:1899102-1899326 (-)
LP/J	MGP_LPJ_G0011468	pseudogene	Chr2:2020442-2020666 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011401	pseudogene	Chr2:2042916-2043140 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011764	pseudogene	Chr2:1977732-1977956 (-)
PWK/PhJ	MGP_PWKPhJ_G0011028	pseudogene	Chr2:1885628-1885852 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010857	pseudogene	Chr2:1967203-1967427 (-)
WSB/EiJ	MGP_WSBEiJ_G0011196	pseudogene	Chr2:1994348-1994572 (-)

Homology

• Gene Tree
  Gm13193
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082795 (Evidence)
• NCBI Gene
  102640490

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082795	Ensembl Gene Model | MGI Sequence Detail	225	C57BL/6J
transcript	ENSMUST00000117275	Ensembl | MGI Sequence Detail	225	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13193:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22390	Chr2:4961163-4961172 (-)	-64 bp