Gm12479 Pseudogene Detail

Summary

• Symbol
  Gm12479
• Name
  predicted gene 12479

• Feature Type
  pseudogene
• IDs
  MGI:3651218
  NCBI Gene: 384018
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:54853128-54854712 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 29.42 cM

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651218	pseudogene	Chr4:54852489-54854712 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012665	pseudogene	Chr4:53533350-53534934 (+)
A/J	MGP_AJ_G0012654	pseudogene	Chr4:51471442-51473127 (+)
AKR/J	MGP_AKRJ_G0012624	pseudogene	Chr4:52877133-52878719 (+)
BALB/cJ	MGP_BALBcJ_G0012637	pseudogene	Chr4:51643074-51644664 (+)
C3H/HeJ	MGP_C3HHeJ_G0012496	pseudogene	Chr4:53400421-53402007 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012963	pseudogene	Chr4:55453433-55455017 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011268	pseudogene	Chr4:48360008-48361619 (+)
CAST/EiJ	MGP_CASTEiJ_G0012252	pseudogene	Chr4:53080329-53081910 (+)
CBA/J	MGP_CBAJ_G0012476	pseudogene	Chr4:57362017-57363598 (+)
DBA/2J	MGP_DBA2J_G0012534	pseudogene	Chr4:51410409-51411995 (+)
FVB/NJ	MGP_FVBNJ_G0012535	pseudogene	Chr4:50630090-50631676 (+)
LP/J	MGP_LPJ_G0012606	pseudogene	Chr4:53617448-53619032 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012543	pseudogene	Chr4:60580077-60581663 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012966	pseudogene	Chr4:53089228-53090814 (+)
PWK/PhJ	MGP_PWKPhJ_G0012079	pseudogene	Chr4:51377098-51378808 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011892	pseudogene	Chr4:52366715-52368276 (+)
WSB/EiJ	MGP_WSBEiJ_G0012274	pseudogene	Chr4:52998752-53000335 (+)

Homology

• Gene Tree
  Gm12479
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082111 (Evidence)
• NCBI Gene
  384018

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082111	Ensembl Gene Model | MGI Sequence Detail	1585	C57BL/6J
transcript	ENSMUST00000120731	Ensembl | MGI Sequence Detail	1585	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;