Gm11843 Pseudogene Detail

Summary

• Symbol
  Gm11843
• Name
  predicted gene 11843

• Feature Type
  pseudogene
• IDs
  MGI:3651166
  NCBI Gene: 101056106
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:12131551-12131975 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 5.58 cM

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651166	pseudogene	Chr4:12130821-12139415 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012514	pseudogene	Chr4:8835295-8835822 (-)
A/J	MGP_AJ_G0012509	pseudogene	Chr4:8699885-8700244 (-)
AKR/J	MGP_AKRJ_G0012473	pseudogene	Chr4:8807511-8807870 (-)
BALB/cJ	MGP_BALBcJ_G0012492	pseudogene	Chr4:8634825-8635184 (-)
C3H/HeJ	MGP_C3HHeJ_G0012353	pseudogene	Chr4:8988402-8988761 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012809	pseudogene	Chr4:9254452-9254876 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011356	pseudogene	Chr2:77227064-77227420 (-)
CBA/J	MGP_CBAJ_G0011543	pseudogene	Chr2:82921829-82922193 (-)
DBA/2J	MGP_DBA2J_G0012388	pseudogene	Chr4:8568716-8569075 (-)
FVB/NJ	MGP_FVBNJ_G0012389	pseudogene	Chr4:8386855-8387214 (-)
LP/J	MGP_LPJ_G0012461	pseudogene	Chr4:8927210-8927871 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011600	pseudogene	Chr2:84737069-84737433 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011973	pseudogene	Chr2:76792292-76792656 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011383	pseudogene	Chr2:77256415-77256779 (-)

Homology

• Gene Tree
  Gm11843
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000082676 (Evidence)
• NCBI Gene
  101056106

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082676	Ensembl Gene Model | MGI Sequence Detail	425	C57BL/6J
transcript	ENSMUST00000118984	Ensembl | MGI Sequence Detail	425	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;