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Platr3 Gene Detail
Summary
  • Symbol
    Platr3
  • Name
    pluripotency associated transcript 3
  • Synonyms
    Gm14074
Location &
Maps
more
  • Sequence Map
    Chr2:135490827-135493983 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 66.62 cM
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3651129
lncRNA gene Chr2:135488443-135493987 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006022
lincRNA gene Chr2:139377369-139383294 (+)
A/J MGP_AJ_G0006015
lincRNA gene Chr2:133707072-133710238 (+)
AKR/J MGP_AKRJ_G0005989
lincRNA gene Chr2:137568538-137572293 (+)
BALB/cJ MGP_BALBcJ_G0005992
lincRNA gene Chr2:134113031-134116262 (+)
C3H/HeJ MGP_C3HHeJ_G0005941
lincRNA gene Chr2:138022208-138029059 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006153
lincRNA gene Chr2:143590988-143595595 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005482
lincRNA gene Chr2:128286883-128289724 (+)
CAST/EiJ MGP_CASTEiJ_G0005876
lincRNA gene Chr2:138352482-138357177 (+)
CBA/J MGP_CBAJ_G0005925
lincRNA gene Chr2:148948034-148951030 (+)
DBA/2J MGP_DBA2J_G0005946
lincRNA gene Chr2:133092202-133095767 (+)
FVB/NJ MGP_FVBNJ_G0005971
lincRNA gene Chr2:131692847-131696121 (+)
LP/J MGP_LPJ_G0006027
lincRNA gene Chr2:139556958-139560553 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005958
lincRNA gene Chr2:152771227-152774241 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006152
lincRNA gene Chr2:137572139-137575098 (+)
PWK/PhJ MGP_PWKPhJ_G0005824
lincRNA gene Chr2:132691911-132695059 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005735
lincRNA gene Chr2:136676031-136678809 (+)
WSB/EiJ MGP_WSBEiJ_G0005928
lincRNA gene Chr2:138495244-138500506 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    30 phenotype references
  • All Mutations and Alleles
    11
  • Chemically induced (other)
    1
  • Gene trapped
    8
  • Radiation induced
    2
  • Genomic Mutations
    3 involving Platr3
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Literature Summary
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000084762 Ensembl Gene Model | MGI Sequence Detail 3157 C57BL/6J ±  kb
transcript ENSMUST00000146980 Ensembl | MGI Sequence Detail 412 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 37
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 30
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:254597 Bhargava S, et al., The epigenetic modifier Fam208a is required to maintain epiblast cell fitness. Sci Rep. 2017 Aug 24;7(1):9322

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/23/2022
MGI 6.20
The Jackson Laboratory