Gm13854 Pseudogene Detail

Summary

• Symbol
  Gm13854
• Name
  predicted gene 13854

• Feature Type
  pseudogene
• IDs
  MGI:3651023
  NCBI Gene: 100416262
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:33352845-33354355 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 14.75 cM

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651023	pseudogene	Chr6:33352046-33354381 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013403	pseudogene	Chr6:31396914-31400469 (-)
A/J	MGP_AJ_G0013387	pseudogene	Chr6:30070719-30073236 (-)
AKR/J	MGP_AKRJ_G0013350	pseudogene	Chr6:31070663-31072769 (-)
BALB/cJ	MGP_BALBcJ_G0013365	pseudogene	Chr6:30222701-30224811 (-)
C3H/HeJ	MGP_C3HHeJ_G0013216	pseudogene	Chr6:31046159-31049801 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013746	pseudogene	Chr6:32207707-32210020 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012927	pseudogene	Chr6:30843825-30847139 (-)
CBA/J	MGP_CBAJ_G0013183	pseudogene	Chr6:33452472-33454740 (-)
DBA/2J	MGP_DBA2J_G0013267	pseudogene	Chr6:29950526-29952886 (-)
FVB/NJ	MGP_FVBNJ_G0013264	pseudogene	Chr6:29737103-29739740 (-)
LP/J	MGP_LPJ_G0013334	pseudogene	Chr6:31534983-31539171 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013281	pseudogene	Chr6:35798153-35812815 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013742	pseudogene	Chr6:30962642-30965780 (-)
PWK/PhJ	MGP_PWKPhJ_G0012739	pseudogene	Chr6:29543627-29545731 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012520	pseudogene	Chr6:30615920-30618024 (-)
WSB/EiJ	MGP_WSBEiJ_G0012967	pseudogene	Chr6:30872133-30874239 (-)

Homology

• Gene Tree
  Gm13854
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000083728 (Evidence)
• NCBI Gene
  100416262

Representative Sequences			Length	Strain/Species
genomic	100416262	NCBI Gene Model | MGI Sequence Detail	1511	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;