Gm13436 Pseudogene Detail

Summary

• Symbol
  Gm13436
• Name
  predicted gene 13436

• Feature Type
  pseudogene
• IDs
  MGI:3651005
  NCBI Gene: 624088
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:36697838-36698404 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 24.19 cM

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651005	pseudogene	Chr2:36697801-36698439 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010827	pseudogene	Chr11:98556193-98556662 (+)
A/J	MGP_AJ_G0010824	pseudogene	Chr11:94532342-94533918 (+)
AKR/J	MGP_AKRJ_G0010784	pseudogene	Chr11:97448168-97448907 (+)
BALB/cJ	MGP_BALBcJ_G0010800	pseudogene	Chr11:95024273-95025608 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014069	pseudogene	Chr6:135344486-135344956 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0010720	pseudogene	Chr11:94099719-94100188 (+)
FVB/NJ	MGP_FVBNJ_G0010738	pseudogene	Chr11:93579450-93579919 (+)
LP/J	MGP_LPJ_G0010810	pseudogene	Chr11:99092864-99093333 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010712	pseudogene	Chr11:105793811-105794280 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13436
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000083716 (Evidence)
• NCBI Gene
  624088

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083716	Ensembl Gene Model | MGI Sequence Detail	567	C57BL/6J
transcript	ENSMUST00000120418	Ensembl | MGI Sequence Detail	567	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13436:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23744	Chr2:36698431-36698441 (-)	-32 bp