Gm11412 Gene Detail

Summary

• Symbol
  Gm11412
• Name
  predicted gene 11412

• Feature Type
  lncRNA gene
• IDs
  MGI:3650905
  NCBI Gene: 102635467
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:81661383-81664938 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 38.40 cM

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650905	lncRNA gene	Chr4:81661383-81709816 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006449	lincRNA gene	Chr4:81308460-81312664 (+)
A/J	MGP_AJ_G0006441	lincRNA gene	Chr4:78491554-78495939 (+)
AKR/J	MGP_AKRJ_G0006415	lincRNA gene	Chr4:80507563-80511338 (+)
BALB/cJ	MGP_BALBcJ_G0006415	lincRNA gene	Chr4:78741935-78745599 (+)
C3H/HeJ	MGP_C3HHeJ_G0006365	lincRNA gene	Chr4:81105973-81110274 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006581	lincRNA gene	Chr4:84520313-84528282 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005866	lincRNA gene	Chr4:74528075-74531460 (+)
CAST/EiJ	MGP_CASTEiJ_G0006298	lincRNA gene	Chr4:79036589-79039934 (+)
CBA/J	MGP_CBAJ_G0006348	lincRNA gene	Chr4:87134247-87138033 (+)
DBA/2J	MGP_DBA2J_G0006370	lincRNA gene	Chr4:78267734-78271062 (+)
FVB/NJ	MGP_FVBNJ_G0006392	lincRNA gene	Chr4:77246978-77250308 (+)
LP/J	MGP_LPJ_G0006451	lincRNA gene	Chr4:81686317-81691185 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006379	lincRNA gene	Chr4:92253025-92257681 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006585	lincRNA gene	Chr4:80547090-80551156 (+)
PWK/PhJ	MGP_PWKPhJ_G0006235	lincRNA gene	Chr4:76632075-76636595 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006147	lincRNA gene	Chr4:78117226-78124787 (+)
WSB/EiJ	MGP_WSBEiJ_G0006344	lincRNA gene	Chr4:80750066-80754704 (+)

Homology

• Gene Tree
  Gm11412
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm11412
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000087540 (Evidence)
• NCBI Gene
  102635467

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087540	Ensembl Gene Model | MGI Sequence Detail	3556	C57BL/6J
transcript	ENSMUST00000144875	Ensembl | MGI Sequence Detail	2800	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;