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Gm12962 Gene Detail
Summary
  • Symbol
    Gm12962
  • Name
    predicted gene 12962
  • Synonyms
    Gm2430
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3650901
    NCBI Gene: 118568696
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:131374668-131405025 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 64.50 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    453 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650901
 lncRNA gene Chr4:131374359-131405156 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006525
 lincRNA gene Chr4:133741615-133771378 (-)
A/J MGP_AJ_G0006517
 lincRNA gene Chr4:128188896-128220122 (-)
AKR/J MGP_AKRJ_G0006491
 lincRNA gene Chr4:131781997-131811821 (-)
BALB/cJ MGP_BALBcJ_G0006491
 lincRNA gene Chr4:128804479-128834309 (-)
C3H/HeJ MGP_C3HHeJ_G0006441
 lincRNA gene Chr4:132027545-132058583 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006657
 lincRNA gene Chr4:138556416-138587970 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005935
 lincRNA gene Chr4:121277603-121310797 (-)
CAST/EiJ MGP_CASTEiJ_G0006373
 lincRNA gene Chr4:130091153-130125595 (-)
CBA/J MGP_CBAJ_G0006424
 lincRNA gene Chr4:142094596-142124787 (-)
DBA/2J MGP_DBA2J_G0006446
 lincRNA gene Chr4:128615674-128645815 (-)
FVB/NJ MGP_FVBNJ_G0006468
 lincRNA gene Chr4:127461114-127492925 (-)
LP/J MGP_LPJ_G0006526
 lincRNA gene Chr4:133900132-133931211 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006455
 lincRNA gene Chr4:146750278-146781692 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006661
 lincRNA gene Chr4:132172654-132203379 (-)
PWK/PhJ MGP_PWKPhJ_G0006310
 lincRNA gene Chr4:125280506-125311468 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006219
 lincRNA gene Chr4:128049131-128084050 (-)
WSB/EiJ MGP_WSBEiJ_G0006419
 lincRNA gene Chr4:132346491-132378576 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Gm12962
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    715
  • Tissues
    8
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 118568696 NCBI Gene Model | MGI Sequence Detail 30358 C57BL/6J ±  kb
transcript NR_189610 RefSeq | MGI Sequence Detail 363 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    Primer pair 1
Other
Accession IDs
less
MGI:3780597
References
more
  • Summaries
    All 12
    Developmental Gene Expression 1
    Phenotypes 4
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory