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Larp7-ps Pseudogene Detail
Summary
  • Symbol
    Larp7-ps
  • Name
    La ribonucleoprotein 7, transcriptional regulator, pseudogene
  • Synonyms
    Gm12666
Location &
Maps
more
  • Sequence Map
    Chr4:92078981-92079986 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 43.16 cM
Strain
Comparison
more
  • SNPs within 2kb
    16 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650864
 pseudogene Chr4:92078980-92079987 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027861
 protein coding gene Chr3:130035441-130036515 (-)
A/J MGP_AJ_G0028409
 protein coding gene Chr4:88968721-88969876 (-)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0027832
 protein coding gene Chr3:125448605-125449509 (-)
C3H/HeJ MGP_C3HHeJ_G0028140
 protein coding gene Chr4:91925111-91926028 (-)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0025614
 protein coding gene Chr3:120840464-120847120 (-)
CAST/EiJ MGP_CASTEiJ_G0027018
 protein coding gene Chr3:128759884-128760854 (-)
CBA/J MGP_CBAJ_G0027537
 protein coding gene Chr3:139288213-139291129 (-)
DBA/2J MGP_DBA2J_G0027678
 protein coding gene Chr3:124808870-124816326 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0020834
 protein coding gene Chr13:114721823-114722529 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027676
 protein coding gene Chr3:147207925-147208839 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028333
 protein coding gene Chr3:128469819-128471496 (-)
PWK/PhJ MGP_PWKPhJ_G0027305
 protein coding gene Chr4:86941157-86943393 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026567
 protein coding gene Chr3:126553422-126563588 (-)
WSB/EiJ MGP_WSBEiJ_G0027097
 protein coding gene Chr3:129187757-129190213 (-)



Homology
more
  • Human Ortholog
    LARP7, La ribonucleoprotein 7, transcriptional regulator
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LARP7, La ribonucleoprotein 7, transcriptional regulator
  • Synonyms
    ALAZS, HDCMA18P, hLARP7, PIP7S
  • Links
    NCBI Gene ID: 51574
    neXtProt AC: NX_Q4G0J3
    UniProt: Q4G0J3

  • Chr Location
    4q25; chr4:112637077-112657696 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Radiation induced
    1
  • Genomic Mutations
    4 involving Larp7-ps
  • Find Mice (IMSR)
    10 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000066107 Ensembl Gene Model | MGI Sequence Detail 1006 C57BL/6J ±  kb
transcript ENSMUST00000123179 Ensembl | MGI Sequence Detail 764 Not Applicable  
polypeptide ENSMUSP00000122212 Ensembl | MGI Sequence Detail 254 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR034887 LARP7, RNA recognition motif 1
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 12
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory