Gm11379 Gene Detail

Summary

• Symbol
  Gm11379
• Name
  predicted gene 11379

• Feature Type
  lncRNA gene
• IDs
  MGI:3650783
  NCBI Gene: 118568039
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr13:31969055-31983714 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 13.52 cM

Strain
Comparison

• SNPs within 2kb
  511 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650783	lncRNA gene	Chr13:31969055-32052265 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003180	antisense lncRNA gene	Chr13:29739432-29742471 (+)
A/J	MGP_AJ_G0003154	antisense lncRNA gene	Chr13:28931765-28934806 (+)
AKR/J	MGP_AKRJ_G0003136	antisense lncRNA gene	Chr13:29565922-29568961 (+)
BALB/cJ	MGP_BALBcJ_G0003142	antisense lncRNA gene	Chr13:29028948-29031987 (+)
C3H/HeJ	MGP_C3HHeJ_G0003098	antisense lncRNA gene	Chr13:29567744-29570783 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003286	antisense lncRNA gene	Chr13:30748743-30751780 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002814	antisense lncRNA gene	Chr13:27303765-27306836 (+)
CAST/EiJ	MGP_CASTEiJ_G0003066	antisense lncRNA gene	Chr13:29257722-29260763 (+)
CBA/J	MGP_CBAJ_G0003094	antisense lncRNA gene	Chr13:32056711-32059750 (+)
DBA/2J	MGP_DBA2J_G0003100	antisense lncRNA gene	Chr13:28454730-28457769 (+)
FVB/NJ	MGP_FVBNJ_G0003119	antisense lncRNA gene	Chr13:28065315-28068354 (+)
LP/J	MGP_LPJ_G0003175	antisense lncRNA gene	Chr13:29957344-29960383 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003108	antisense lncRNA gene	Chr13:32167139-32170178 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003286	antisense lncRNA gene	Chr13:29234951-29237990 (+)
PWK/PhJ	MGP_PWKPhJ_G0003024	antisense lncRNA gene	Chr13:28618417-28621542 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002969	antisense lncRNA gene	Chr13:28127787-28131011 (+)
WSB/EiJ	MGP_WSBEiJ_G0003098	antisense lncRNA gene	Chr13:29523620-29526663 (+)

Homology

• Gene Tree
  Gm11379
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm11379
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000086144 (Evidence)
• NCBI Gene
  118568039

Representative Sequences			Length	Strain/Species
genomic	118568039	NCBI Gene Model | MGI Sequence Detail	14660	C57BL/6J
transcript	XR_004938098	RefSeq | MGI Sequence Detail	1290	C57BL/6J

References

• Summaries
  All 14

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for Gm11379:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119133	Chr13:31969095-31969103 (+)	44 bp
Tssr119134	Chr13:31969116-31969128 (+)	67 bp
Tssr119135	Chr13:31969206-31969215 (+)	156 bp
Tssr119136	Chr13:31969226-31969236 (+)	176 bp
Tssr119137	Chr13:31969241-31969253 (+)	192 bp