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Msantd5 Gene Detail
Summary
  • Symbol
    Msantd5
  • Name
    Myb/SANT DNA binding domain containing 5
  • Synonyms
    Gm12569
  • Feature Type
    protein coding gene
  • IDs
    MGI:3650740
    NCBI Gene: 622699
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr11:51220473-51235053 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 31.02 cM
Strain
Comparison
more
  • SNPs within 2kb
    161 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650740
protein coding gene Chr11:51220473-51239758 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002950
antisense lncRNA gene Chr11:50452005-50453701 (+)
A/J MGP_AJ_G0002927
antisense lncRNA gene Chr11:48564387-48565975 (+)
AKR/J MGP_AKRJ_G0002908
antisense lncRNA gene Chr11:50089745-50091333 (+)
BALB/cJ MGP_BALBcJ_G0002915
antisense lncRNA gene Chr11:48863449-48865037 (+)
C3H/HeJ MGP_C3HHeJ_G0002870
antisense lncRNA gene Chr11:50124747-50126335 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003057
antisense lncRNA gene Chr11:51994843-51996431 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002599
antisense lncRNA gene Chr11:46139523-46141118 (+)
CAST/EiJ MGP_CASTEiJ_G0002842
antisense lncRNA gene Chr11:50107477-50111457 (+)
CBA/J MGP_CBAJ_G0002867
antisense lncRNA gene Chr11:54434027-54435615 (+)
DBA/2J MGP_DBA2J_G0002874
antisense lncRNA gene Chr11:48278601-48280189 (+)
FVB/NJ MGP_FVBNJ_G0002892
antisense lncRNA gene Chr11:47975258-47976846 (+)
LP/J MGP_LPJ_G0002949
antisense lncRNA gene Chr11:50880260-50881848 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0003060
antisense lncRNA gene Chr11:50177179-50178766 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002748
antisense lncRNA gene Chr11:49912920-49915673 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    MSANTD5, Myb/SANT DNA binding domain containing 5
  • Vertebrate Orthologs
    2
  • Human Ortholog
    MSANTD5, Myb/SANT DNA binding domain containing 5
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 102724657

  • Chr Location
    chr5:178691534-178707472 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061469 Ensembl Gene Model | MGI Sequence Detail 14581 C57BL/6J ±  kb
transcript ENSMUST00000126189 Ensembl | MGI Sequence Detail 1462 Not Applicable  
polypeptide ENSMUSP00000155969 Ensembl | MGI Sequence Detail 225 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 10
    Phenotypes 3
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/10/2020
MGI 6.16
The Jackson Laboratory