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Gm13629 Gene Detail
Summary
  • Symbol
    Gm13629
  • Name
    predicted gene 13629
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3650683
    NCBI Gene: 100038743
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:66440880-66546026 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 39.13 cM
Strain
Comparison
more
  • SNPs within 2kb
    889 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650683
lncRNA gene Chr2:66440880-66547472 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003575
antisense lncRNA gene Chr2:66288776-66400024 (+)
A/J MGP_AJ_G0003556
antisense lncRNA gene Chr2:63706849-63812769 (+)
AKR/J MGP_AKRJ_G0003534
antisense lncRNA gene Chr2:65446686-65564220 (+)
BALB/cJ MGP_BALBcJ_G0003545
antisense lncRNA gene Chr2:63892449-64007816 (+)
C3H/HeJ MGP_C3HHeJ_G0003492
antisense lncRNA gene Chr2:65625028-65732115 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003683
antisense lncRNA gene Chr2:68245428-68370328 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003192
antisense lncRNA gene Chr2:61060245-61164749 (+)
CAST/EiJ MGP_CASTEiJ_G0003455
antisense lncRNA gene Chr2:65702149-65824243 (+)
CBA/J MGP_CBAJ_G0003489
antisense lncRNA gene Chr2:70791724-70915520 (+)
DBA/2J MGP_DBA2J_G0003497
antisense lncRNA gene Chr2:63355873-63462407 (+)
FVB/NJ MGP_FVBNJ_G0003517
antisense lncRNA gene Chr2:62773876-62884759 (+)
LP/J MGP_LPJ_G0003570
antisense lncRNA gene Chr2:66124566-66232391 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003505
antisense lncRNA gene Chr2:72765646-72903993 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003686
antisense lncRNA gene Chr2:65512319-65625267 (+)
PWK/PhJ MGP_PWKPhJ_G0003410
antisense lncRNA gene Chr2:63175615-63285023 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003355
antisense lncRNA gene Chr2:65683808-65793509 (+)
WSB/EiJ MGP_WSBEiJ_G0003490
antisense lncRNA gene Chr2:65886873-66011616 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087301 Ensembl Gene Model | MGI Sequence Detail 105147 C57BL/6J ±  kb
transcript ENSMUST00000141149 Ensembl | MGI Sequence Detail 1022 Not Applicable  
polypeptide Q3V3K8 UniProt | EBI | MGI Sequence Detail 95 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 14
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:237720 Koenig J, et al., Regulation of Nav1.7: A Conserved SCN9A Natural Antisense Transcript Expressed in Dorsal Root Ganglia. PLoS One. 2015;10(6):e0128830

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/14/2020
MGI 6.14
The Jackson Laboratory