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Trav9d-1 Gene Detail
Summary
  • Symbol
    Trav9d-1
  • Name
    T cell receptor alpha variable 9D-1
  • Feature Type
    gene segment
  • IDs
    MGI:3650631
    NCBI Gene: 671927
  • Alliance
Location &
Maps
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  • Sequence Map
    Chr14:53029773-53030233 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.09 cM
Strain
Comparison
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  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650631
gene segment Chr14:53029773-53030234 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002532
gene segment Chr14:46844120-46844643 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002621
gene segment Chr14:48943984-48944555 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002439
gene segment Chr14:44092777-44093238 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002484
gene segment Chr14:50644552-50645089 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002642
gene segment Chr14:46923616-47326430 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002358
gene segment Chr14:43085315-43085776 (+)
WSB/EiJ MGP_WSBEiJ_G0002468
gene segment Chr14:46916531-46916992 (+)



Homology
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 671927 NCBI Gene Model | MGI Sequence Detail 461 C57BL/6J ±  kb
polypeptide A0A075B699 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
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  • Microarray probesets 2
References
more
  • Summaries
    All 10
  • Earliest
    J:71206 Haines BB, et al., Germline diversity of the expressed BALB/c VhJ558 gene family. Mol Immunol. 2001 Jan;38(1):9-18
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/12/2022
MGI 6.17
The Jackson Laboratory