About   Help   FAQ
Trav4d-2 Pseudogene Detail
Summary
  • Symbol
    Trav4d-2
  • Name
    T cell receptor alpha variable 4D-2
  • Feature Type
    pseudogenic gene segment
  • IDs
    MGI:3650629
    NCBI Gene: 546612
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:52948374-52948859 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.06 cM
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650629
pseudogenic gene segment Chr14:52948370-52948859 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002615
pseudogenic gene segment Chr14:47330170-47330660 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002569
pseudogenic gene segment Chr14:48005894-48006384 (+)
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002717
pseudogenic gene segment Chr14:49662783-49663061 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002508
pseudogenic gene segment Chr14:43895381-43895870 (+)
CBA/J MGP_CBAJ_G0002536
pseudogenic gene segment Chr14:51122367-51122856 (+)
DBA/2J MGP_DBA2J_G0002534
pseudogenic gene segment Chr14:45300324-45300813 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002543
pseudogenic gene segment Chr14:49765380-49765870 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002727
pseudogenic gene segment Chr14:47255831-47256321 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002431
pseudogenic gene segment Chr2:107704005-107704494 (-)
WSB/EiJ MGP_WSBEiJ_G0002536
pseudogenic gene segment Chr14:46841695-46842185 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 546612 NCBI Gene Model | MGI Sequence Detail 486 C57BL/6J ±  kb
For the selected sequence
References
more
  • Summaries
    All 8
    Phenotypes 2
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/19/2024
MGI 6.23
The Jackson Laboratory