Gm11943 Pseudogene Detail

Summary

• Symbol
  Gm11943
• Name
  predicted gene 11943

• Feature Type
  pseudogene
• IDs
  MGI:3650545
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:33001995-33002321 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 14.59 cM

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650545	pseudogene	Chr4:33001995-33002321 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012596	pseudogene	Chr4:30491779-30492105 (-)
A/J	MGP_AJ_G0012586	pseudogene	Chr4:29401107-29401433 (-)
AKR/J	MGP_AKRJ_G0012551	pseudogene	Chr4:30170792-30171118 (-)
BALB/cJ	MGP_BALBcJ_G0012572	pseudogene	Chr4:29665582-29665908 (-)
C3H/HeJ	MGP_C3HHeJ_G0012433	pseudogene	Chr4:30453467-30453793 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012888	pseudogene	Chr4:31686678-31687004 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012189	pseudogene	Chr4:30233111-30233437 (-)
CBA/J	MGP_CBAJ_G0012411	pseudogene	Chr4:32720502-32720828 (-)
DBA/2J	MGP_DBA2J_G0012464	pseudogene	Chr4:29406500-29406826 (-)
FVB/NJ	MGP_FVBNJ_G0012469	pseudogene	Chr4:28828954-28829280 (-)
LP/J	MGP_LPJ_G0012538	pseudogene	Chr4:30581479-30581805 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012472	pseudogene	Chr4:35285131-35285457 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012888	pseudogene	Chr4:30178679-30179005 (-)
PWK/PhJ	MGP_PWKPhJ_G0012019	pseudogene	Chr4:29399625-29399951 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011840	pseudogene	Chr4:30063565-30063891 (-)
WSB/EiJ	MGP_WSBEiJ_G0012213	pseudogene	Chr4:30174856-30175182 (-)

Homology

• Gene Tree
  Gm11943
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm11943
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000081025 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081025	Ensembl Gene Model | MGI Sequence Detail	327	C57BL/6J
transcript	ENSMUST00000119473	Ensembl | MGI Sequence Detail	327	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;