Gm12209 Pseudogene Detail

Summary

• Symbol
  Gm12209
• Name
  predicted gene 12209

• Feature Type
  pseudogene
• IDs
  MGI:3650470
  NCBI Gene: 105244164
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:52369335-52369930 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 31.86 cM

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650470	pseudogene	Chr11:52368139-52372111 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010698	pseudogene	Chr11:49557211-49558010 (+)
AKR/J	MGP_AKRJ_G0010656	pseudogene	Chr11:51115024-51116199 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010943	pseudogene	Chr11:50150095-50150624 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0010613	pseudogene	Chr11:49255391-49256060 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010587	pseudogene	Chr11:57237520-57238103 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12209
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12209
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000081297 (Evidence)
• NCBI Gene
  105244164

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081297	Ensembl Gene Model | MGI Sequence Detail	596	C57BL/6J
transcript	ENSMUST00000120089	Ensembl | MGI Sequence Detail	596	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm12209:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107897	Chr11:52371743-52371750 (-)	-1,817 bp