Gm12208 Pseudogene Detail

Summary

• Symbol
  Gm12208
• Name
  predicted gene 12208

• Feature Type
  pseudogene
• IDs
  MGI:3650469
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:52296143-52296305 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 31.86 cM

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650469	pseudogene	Chr11:52296143-52296305 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010700	pseudogene	Chr11:51724978-51725140 (+)
A/J	MGP_AJ_G0010699	pseudogene	Chr11:49785713-49785875 (+)
AKR/J	MGP_AKRJ_G0010657	pseudogene	Chr11:51387866-51388028 (+)
BALB/cJ	MGP_BALBcJ_G0010670	pseudogene	Chr11:50116061-50116223 (+)
C3H/HeJ	MGP_C3HHeJ_G0010585	pseudogene	Chr11:51367701-51367863 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010949	pseudogene	Chr11:53301098-53301260 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009584	pseudogene	Chr11:47289065-47289218 (+)
CAST/EiJ	MGP_CASTEiJ_G0010408	pseudogene	Chr11:51404601-51404763 (+)
CBA/J	MGP_CBAJ_G0010560	pseudogene	Chr11:55810633-55810795 (+)
DBA/2J	MGP_DBA2J_G0010596	pseudogene	Chr11:49516931-49517093 (+)
FVB/NJ	MGP_FVBNJ_G0010611	pseudogene	Chr11:49178075-49178237 (+)
LP/J	MGP_LPJ_G0010683	pseudogene	Chr11:52142040-52142202 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010585	pseudogene	Chr11:57162674-57162836 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010921	pseudogene	Chr11:51446891-51447053 (+)
PWK/PhJ	MGP_PWKPhJ_G0010304	pseudogene	Chr11:50014441-50014603 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010113	pseudogene	Chr11:51235181-51235342 (+)
WSB/EiJ	MGP_WSBEiJ_G0010467	pseudogene	Chr11:51068374-51068536 (+)

Homology

• Gene Tree
  Gm12208
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12208
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000080951 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080951	Ensembl Gene Model | MGI Sequence Detail	163	C57BL/6J
transcript	ENSMUST00000122004	Ensembl | MGI Sequence Detail	163	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12208:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101368	Chr11:52294268-52294308 (+)	-1,855 bp
Tssr101369	Chr11:52296082-52296089 (+)	-57 bp