Gm13090 Gene Detail

Summary

• Symbol
  Gm13090
• Name
  predicted gene 13090

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3650445
  NCBI Gene: 105704528
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:151173833-151175906 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 81.55 cM

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650445	protein coding gene	Chr4:151173438-151175919 (+)
129S1/SvImJ	ENSMUSG00200018878	protein coding gene	Chr4:142236903-142238776 (+)
A/J	ENSMUSG00195014755	protein coding gene	Chr4:143873221-143875100 (+)
AKR/J	ENSMUSG00220023736	protein coding gene	Chr4:143458838-143460711 (+)
BALB/cJ	ENSMUSG00180002269	protein coding gene	Chr4:141555763-141557642 (+)
C3H/HeJ	ENSMUSG00175017326	protein coding gene	Chr4:144839116-144840989 (+)
C57BL/6NJ	ENSMUSG00215007299	protein coding gene	Chr4:143684231-143686110 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026839	protein coding gene	Chr4:140982057-140983917 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210004626	protein coding gene	Chr4:143490741-143492614 (+)
DBA/2J	ENSMUSG00185014043	protein coding gene	Chr4:147056905-147058778 (+)
FVB/NJ	ENSMUSG00205037702	protein coding gene	Chr4:141953339-141955212 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230019753	protein coding gene	Chr4:153788950-153790823 (+)
NOD/ShiLtJ	ENSMUSG00190003883	protein coding gene	Chr4:143156487-143158360 (+)
NZO/HlLtJ	ENSMUSG00225023674	protein coding gene	Chr4:157784064-157785937 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13090
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  9
• Endonuclease-mediated
  1
• Targeted
  8
• Genomic Mutations
  3 involving Gm13090
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  4
• CCDS
  CCDS84827.1

• Ensembl
  ENSMUSG00000078491 (Evidence)
• NCBI Gene
  105704528

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078491	Ensembl Gene Model | MGI Sequence Detail	2074	C57BL/6J
transcript	ENSMUST00000105667	Ensembl | MGI Sequence Detail	940	Not Applicable
polypeptide	NP_001295375	RefSeq | MGI Sequence Detail	111	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 7
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16