Gm12502 Pseudogene Detail

Summary

• Symbol
  Gm12502
• Name
  predicted gene 12502

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3650307
  NCBI Gene: 102640327
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:107927201-107927644 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650307	pseudogene	Chr3:107927201-107927725 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012344	pseudogene	Chr3:109546696-109547364 (+)
A/J	MGP_AJ_G0012339	pseudogene	Chr3:106072999-106073442 (+)
AKR/J	MGP_AKRJ_G0012305	pseudogene	Chr3:108660752-108661160 (+)
BALB/cJ	MGP_BALBcJ_G0012322	pseudogene	Chr3:105770174-105770617 (+)
C3H/HeJ	MGP_C3HHeJ_G0012186	pseudogene	Chr3:108998390-109000423 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012634	pseudogene	Chr3:113640006-113641066 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013107	pseudogene	Chr6:95269691-95270136 (+)
CBA/J	MGP_CBAJ_G0012165	pseudogene	Chr3:117504222-117504665 (+)
DBA/2J	MGP_DBA2J_G0012221	pseudogene	Chr3:105260243-105260686 (+)
FVB/NJ	MGP_FVBNJ_G0010137	pseudogene	Chr1:75405077-75405519 (-)
LP/J	MGP_LPJ_G0012291	pseudogene	Chr3:110969642-110970085 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012227	pseudogene	Chr3:123579710-123580153 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012639	pseudogene	Chr3:108253847-108254290 (+)
PWK/PhJ	MGP_PWKPhJ_G0012912	pseudogene	Chr6:90676801-90677245 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011612	pseudogene	Chr3:106388922-106389370 (+)
WSB/EiJ	MGP_WSBEiJ_G0011985	pseudogene	Chr3:108781605-108782048 (+)

Homology

• Gene Tree
  Gm12502
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12502
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000083627 (Evidence)
• NCBI Gene
  102640327

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083627	Ensembl Gene Model | MGI Sequence Detail	444	C57BL/6J
transcript	ENSMUST00000120197	Ensembl | MGI Sequence Detail	444	Not Applicable
polypeptide	XP_036019400	RefSeq | MGI Sequence Detail	105	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;