Gm13548 Pseudogene Detail

Summary

• Symbol
  Gm13548
• Name
  predicted gene 13548

• Feature Type
  pseudogene
• IDs
  MGI:3650193
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:52629083-52629467 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 30.52 cM

Strain
Comparison

• SNPs within 2kb
  4 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650193	pseudogene	Chr2:52629083-52629467 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039692	pseudogene	Chr2:52101510-52101894 (-)
A/J	MGP_AJ_G0039690	pseudogene	Chr2:50076266-50076650 (-)
AKR/J	MGP_AKRJ_G0039616	pseudogene	Chr2:51513810-51514194 (-)
BALB/cJ	MGP_BALBcJ_G0039660	pseudogene	Chr2:50182192-50182576 (-)
C3H/HeJ	MGP_C3HHeJ_G0039322	pseudogene	Chr2:51525743-51526127 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040221	pseudogene	Chr2:53628334-53628718 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036857	pseudogene	Chr2:48048509-48048894 (-)
CAST/EiJ	MGP_CASTEiJ_G0038443	pseudogene	Chr2:51633921-51634305 (-)
CBA/J	MGP_CBAJ_G0039293	pseudogene	Chr2:55664550-55664934 (-)
DBA/2J	MGP_DBA2J_G0039487	pseudogene	Chr2:49725902-49726286 (-)
FVB/NJ	MGP_FVBNJ_G0039445	pseudogene	Chr2:49413211-49413595 (-)
LP/J	MGP_LPJ_G0039526	pseudogene	Chr2:51983230-51983614 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039447	pseudogene	Chr2:56667419-56667803 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040322	pseudogene	Chr2:51449838-51450222 (-)
PWK/PhJ	MGP_PWKPhJ_G0038119	pseudogene	Chr2:49610850-49611234 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037869	pseudogene	Chr2:51650862-51651251 (-)
WSB/EiJ	MGP_WSBEiJ_G0038676	pseudogene	Chr2:51723637-51724021 (-)

Homology

• Gene Tree
  Gm13548
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13548
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085815 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085815	Ensembl Gene Model | MGI Sequence Detail	385	C57BL/6J
transcript	ENSMUST00000144688	Ensembl | MGI Sequence Detail	385	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;