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Trabd2b Gene Detail
Summary
  • Symbol
    Trabd2b
  • Name
    TraB domain containing 2B
  • Synonyms
    Gm12824, Hkat
  • Feature Type
    protein coding gene
  • IDs
    MGI:3650152
    NCBI Gene: 666048
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:114406724-114615098 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 51.84 cM
Strain
Comparison
more
  • SNPs within 2kb
    1687 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650152
protein coding gene Chr4:114406197-114615098 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028588
protein coding gene Chr4:115138398-115359807 (+)
A/J MGP_AJ_G0028550
protein coding gene Chr4:110736134-110945573 (+)
AKR/J MGP_AKRJ_G0028498
protein coding gene Chr4:113026716-113249549 (+)
BALB/cJ MGP_BALBcJ_G0028570
protein coding gene Chr4:111383443-111593497 (+)
C3H/HeJ MGP_C3HHeJ_G0028284
protein coding gene Chr4:114663083-114874954 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029014
protein coding gene Chr4:119606868-119833208 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026299
protein coding gene Chr4:104851430-105059409 (+)
CAST/EiJ MGP_CASTEiJ_G0027721
protein coding gene Chr4:112052209-112279821 (+)
CBA/J MGP_CBAJ_G0028252
protein coding gene Chr4:122717804-122938845 (+)
DBA/2J MGP_DBA2J_G0028401
protein coding gene Chr4:111402332-111610940 (+)
FVB/NJ MGP_FVBNJ_G0028369
protein coding gene Chr4:109868659-110075846 (+)
LP/J MGP_LPJ_G0028502
protein coding gene Chr4:115345838-115559793 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028394
protein coding gene Chr4:127874651-128091525 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029050
protein coding gene Chr4:114276101-114496354 (+)
PWK/PhJ MGP_PWKPhJ_G0027446
protein coding gene Chr4:108176841-108394919 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027270
protein coding gene Chr4:110686197-110892902 (+)
WSB/EiJ MGP_WSBEiJ_G0027799
protein coding gene Chr4:114066897-114282228 (+)



Homology
more
  • Human Ortholog
    TRABD2B, TraB domain containing 2B
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TRABD2B, TraB domain containing 2B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TIKI2
  • Links
    NCBI Gene ID: 388630
    neXtProt AC: NX_A6NFA1
    UniProt: A6NFA1

  • Chr Location
    1p33; chr1:47760528-47997367 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Trabd2b
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000070867 Ensembl Gene Model | MGI Sequence Detail 208375 C57BL/6J ±  kb
transcript ENSMUST00000094894 Ensembl | MGI Sequence Detail 6617 Not Applicable  
polypeptide ENSMUSP00000092494 Ensembl | MGI Sequence Detail 517 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 25
    cDNA 24
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:260471 Gerhardt B, et al., Notum attenuates Wnt/beta-catenin signaling to promote tracheal cartilage patterning. Dev Biol. 2018 Apr 1;436(1):14-27

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory