Gm14472 Pseudogene Detail

Summary

• Symbol
  Gm14472
• Name
  predicted gene 14472

• Feature Type
  pseudogene
• IDs
  MGI:3650138
  NCBI Gene: 674469
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:153255769-153256050 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 75.41 cM

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650138	pseudogene	Chr2:153255034-153256308 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011929	pseudogene	Chr2:158059052-158059333 (+)
A/J	MGP_AJ_G0011922	pseudogene	Chr2:151728294-151728575 (+)
AKR/J	MGP_AKRJ_G0011887	pseudogene	Chr2:156162703-156162984 (+)
BALB/cJ	MGP_BALBcJ_G0011900	pseudogene	Chr2:152032882-152033163 (+)
C3H/HeJ	MGP_C3HHeJ_G0011780	pseudogene	Chr2:156545354-156545635 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012200	pseudogene	Chr2:162642200-162642481 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009978	pseudogene	Chr14:78463028-78463318 (-)
CAST/EiJ	MGP_CASTEiJ_G0011566	pseudogene	Chr2:156792929-156793210 (+)
CBA/J	MGP_CBAJ_G0011755	pseudogene	Chr2:168645230-168645511 (+)
DBA/2J	MGP_DBA2J_G0011808	pseudogene	Chr2:150937791-150938072 (+)
FVB/NJ	MGP_FVBNJ_G0011814	pseudogene	Chr2:149402400-149402681 (+)
LP/J	MGP_LPJ_G0011876	pseudogene	Chr2:158205621-158205902 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011814	pseudogene	Chr2:172656819-172657100 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012198	pseudogene	Chr2:156073613-156073894 (+)
PWK/PhJ	MGP_PWKPhJ_G0011416	pseudogene	Chr2:150472959-150473240 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011230	pseudogene	Chr2:154892913-154893194 (+)
WSB/EiJ	MGP_WSBEiJ_G0011586	pseudogene	Chr2:156951005-156951286 (+)

Homology

• Gene Tree
  Gm14472
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082283 (Evidence)
• NCBI Gene
  674469

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082283	Ensembl Gene Model | MGI Sequence Detail	282	C57BL/6J
transcript	ENSMUST00000119815	Ensembl | MGI Sequence Detail	282	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm14472:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr698	Chr2:153255722-153255735 (+)	-40 bp