Gm11650 Gene Detail

Summary

• Symbol
  Gm11650
• Name
  predicted gene 11650

• Feature Type
  lncRNA gene
• IDs
  MGI:3650132
  NCBI Gene: 108167931
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:107684698-107686679 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 70.32 cM

Strain
Comparison

• SNPs within 2kb
  4 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650132	lncRNA gene	Chr11:107684652-107687202 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015217	unclassified non-coding RNA gene	Chr11:111216585-111220352 (+)
A/J	MGP_AJ_G0015191	unclassified non-coding RNA gene	Chr11:106447928-106450045 (+)
AKR/J	MGP_AKRJ_G0015154	unclassified non-coding RNA gene	Chr11:109630707-109632824 (+)
BALB/cJ	MGP_BALBcJ_G0015153	unclassified non-coding RNA gene	Chr11:106869884-106873370 (+)
C3H/HeJ	MGP_C3HHeJ_G0014977	unclassified non-coding RNA gene	Chr11:109943155-109945272 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015610	unclassified non-coding RNA gene	Chr11:114647120-114649208 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013352	unclassified non-coding RNA gene	Chr11:103707877-103709983 (+)
CAST/EiJ	MGP_CASTEiJ_G0014530	unclassified non-coding RNA gene	Chr11:111044738-111046852 (+)
CBA/J	MGP_CBAJ_G0014956	unclassified non-coding RNA gene	Chr11:119380050-119382245 (+)
DBA/2J	MGP_DBA2J_G0015049	unclassified non-coding RNA gene	Chr11:105929248-105931356 (+)
FVB/NJ	MGP_FVBNJ_G0015060	unclassified non-coding RNA gene	Chr11:105431040-105433345 (+)
LP/J	MGP_LPJ_G0015130	unclassified non-coding RNA gene	Chr11:111665385-111667347 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015087	unclassified non-coding RNA gene	Chr11:118596566-118599646 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015649	unclassified non-coding RNA gene	Chr11:110188578-110190768 (+)
PWK/PhJ	MGP_PWKPhJ_G0014322	unclassified non-coding RNA gene	Chr11:107071247-107073449 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014109	unclassified non-coding RNA gene	Chr11:109944945-109947053 (+)
WSB/EiJ	MGP_WSBEiJ_G0014633	unclassified non-coding RNA gene	Chr11:110130804-110132918 (+)

Homology

• Gene Tree
  Gm11650
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000087184 (Evidence)
• NCBI Gene
  108167931

Representative Sequences			Length	Strain/Species
genomic	108167931	NCBI Gene Model | MGI Sequence Detail	1982	C57BL/6J
transcript	NR_165828	RefSeq | MGI Sequence Detail	1010	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11650:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105596	Chr11:107684692-107684703 (+)	0 bp