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Trav8d-1 Gene Detail
Summary
  • Symbol
    Trav8d-1
  • Name
    T cell receptor alpha variable 8D-1
  • Feature Type
    gene segment
  • IDs
    MGI:3650121
    NCBI Gene: 667476
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:53015967-53016452 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.09 cM
Strain
Comparison
more
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650121
gene segment Chr14:53015904-53016452 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002530
gene segment Chr14:46818151-46818699 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002488
gene segment Chr14:47271985-47272533 (+)
BALB/cJ MGP_BALBcJ_G0002495
gene segment Chr14:45704546-45705094 (+)
C3H/HeJ MGP_C3HHeJ_G0002470
gene segment Chr14:47010120-47010668 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002212
gene segment Chr14:31369111-31369657 (+)
CAST/EiJ MGP_CASTEiJ_G0002436
gene segment Chr14:44078755-44079301 (+)
CBA/J MGP_CBAJ_G0002462
gene segment Chr14:50390353-50390901 (+)
DBA/2J MGP_DBA2J_G0002471
gene segment Chr14:45363073-45363621 (+)
FVB/NJ MGP_FVBNJ_G0002484
gene segment Chr14:44935106-44935654 (+)
LP/J MGP_LPJ_G0002527
gene segment Chr14:47483348-47483896 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002455
gene segment Chr14:49844738-49845286 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0002415
gene segment Chr14:42134143-42134691 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002355
gene segment Chr14:43080051-43080599 (+)
WSB/EiJ MGP_WSBEiJ_G0002465
gene segment Chr14:46899371-46899919 (+)



Homology
more
  • Human Ortholog
    TRAV17, T cell receptor alpha variable 17
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV17, T cell receptor alpha variable 17
  • Synonyms
    TCRAV17S1, TCRAV3S1
  • Links
    NCBI Gene ID: 28666
    UniProt: A0A0B4J275

  • Chr Location
    14q11.2; chr14:21997686-21998168 (+)  GRCh38.p7

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 667476 NCBI Gene Model | MGI Sequence Detail 486 C57BL/6J ±  kb
transcript AF126456 GenBank | ENA | DDBJ | MGI Sequence Detail 363 (C57BL/6 x DBA/2)F1  
polypeptide Q5R1H8 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/23/2021
MGI 6.17
The Jackson Laboratory