Gm11975 Pseudogene Detail

Summary

• Symbol
  Gm11975
• Name
  predicted gene 11975

• Feature Type
  pseudogene
• IDs
  MGI:3650057
  NCBI Gene: 665327
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:6509023-6509503 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 4.49 cM

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650057	pseudogene	Chr11:6509023-6509503 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010574	pseudogene	Chr11:3698870-3699350 (-)
A/J	MGP_AJ_G0010567	pseudogene	Chr11:3535824-3536898 (-)
AKR/J	MGP_AKRJ_G0010527	pseudogene	Chr11:3712681-3713340 (-)
BALB/cJ	MGP_BALBcJ_G0010542	pseudogene	Chr11:3544462-3544881 (-)
C3H/HeJ	MGP_C3HHeJ_G0010464	pseudogene	Chr11:3601317-3602810 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010811	pseudogene	Chr11:3795869-3796318 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009480	pseudogene	Chr11:3421095-3421581 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010436	pseudogene	Chr11:4222011-4222462 (-)
DBA/2J	MGP_DBA2J_G0010466	pseudogene	Chr11:3447644-3448073 (-)
FVB/NJ	MGP_FVBNJ_G0010483	pseudogene	Chr11:3468684-3469156 (-)
LP/J	MGP_LPJ_G0010556	pseudogene	Chr11:3767938-3769300 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010460	pseudogene	Chr11:3769826-3770259 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010789	pseudogene	Chr11:3739318-3739798 (-)
PWK/PhJ	MGP_PWKPhJ_G0010188	pseudogene	Chr11:3485104-3485747 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010349	pseudogene	Chr11:3563089-3563531 (-)

Homology

• Gene Tree
  Gm11975
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000084231 (Evidence)
• NCBI Gene
  665327

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084231	Ensembl Gene Model | MGI Sequence Detail	481	C57BL/6J
transcript	ENSMUST00000118772	Ensembl | MGI Sequence Detail	481	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm11975:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106742	Chr11:6511000-6511023 (-)	-1,509 bp
Tssr106741	Chr11:6510972-6510976 (-)	-1,471 bp