Gm13882 Pseudogene Detail

Summary

• Symbol
  Gm13882
• Name
  predicted gene 13882

• Feature Type
  pseudogene
• IDs
  MGI:3650052
  NCBI Gene: 100043349
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:104121919-104122920 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 54.69 cM

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650052	pseudogene	Chr2:104121901-104123112 (+)
129S1/SvImJ	ENSMUSG00200002578	pseudogene	Chr2:100951073-100952074 (+)
A/J	ENSMUSG00195000665	pseudogene	Chr2:101100727-101101728 (+)
AKR/J	ENSMUSG00220001639	pseudogene	Chr2:100850866-100851867 (+)
BALB/cJ	ENSMUSG00180021815	pseudogene	Chr2:100901802-100902803 (+)
C3H/HeJ	ENSMUSG00175010117	pseudogene	Chr2:101181571-101182572 (+)
C57BL/6NJ	ENSMUSG00215018023	pseudogene	Chr2:101006522-101007523 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038484	pseudogene	Chr16:21350199-21351200 (-)
CAST/EiJ	ENSTCUG00005001734	pseudogene	Chr2:100272233-100273234 (+)
CAST/EiJ	ENSTCUG00005009659	pseudogene	Chr2:170778592-170779593 (+)
CBA/J	ENSMUSG00210039231	pseudogene	Chr2:101179641-101180642 (+)
DBA/2J	ENSMUSG00185005704	pseudogene	Chr2:100898576-100899577 (+)
FVB/NJ	ENSMUSG00205011366	pseudogene	Chr2:100232403-100233404 (+)
JF1/MsJ	ENSUMUG00000032928	pseudogene	Chr14:129838045-129839047 (+)
JF1/MsJ	ENSUMUG00000029818	pseudogene	Chr2:100592835-100593836 (+)
JF1/MsJ	ENSUMUG00000050293	pseudogene	Chr1:55333053-55334054 (+)
JF1/MsJ	ENSUMUG00000032216	pseudogene	ChrX:59504752-59505753 (-)
LP/J	ENSMUSG00230006550	pseudogene	Chr2:102647927-102648928 (+)
NOD/ShiLtJ	ENSMUSG00190023667	pseudogene	Chr2:101020630-101021631 (+)
NZO/HlLtJ	ENSMUSG00225008784	pseudogene	Chr2:110555112-110556113 (+)
PWK/PhJ	ENSLUMG00010031685	pseudogene	Chr14:112792557-112793559 (+)
PWK/PhJ	ENSLUMG00010024721	pseudogene	Chr2:100601826-100602827 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001463	pseudogene	Chr2:100702749-100703750 (+)

Homology

• Gene Tree
  Gm13882
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13882
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  GEISHA GAPDH

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000081721 (Evidence)
• NCBI Gene
  100043349

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081721	Ensembl Gene Model | MGI Sequence Detail	1002	C57BL/6J
transcript	ENSMUST00000120886	Ensembl | MGI Sequence Detail	1002	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17